|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043729 ID=TCONS_00043729|Name=TCONS_00043729|organism=Clytia hemisphaerica|type=transcript|length=2393bp
caattatatAATATCAATTTAATATTATTGTGATGAGAACTTTTCAGGTA
ACAAAAtggtgtaaaatttgttacttCATACTGAAGGTTTAGAAAGTAAT
CTGTCAAAAACGAAAAACGTCTATTCACTTTTATGATCATAACATGTAGA
AaccagccaaattttaggaCGAGCCGTCTTTTCTTGAACTTTTTCTAACG
ACCTAATCAAAGGCTTTTCAATAGGAACGACGAGAACACTTTGGGTATTC
AGAGATCCTCGTTTTCTATTCCATCTCATTTCTCTGGATTCATGTATGTT
TTCTAGTCCCAACTTAACCGACGGTATTTTCTCCACCTGAAAGTCCAAAA
TTTCCAGCTCCCATCTCCCAACTCTATATTTTCTTCTAGCTCACAACGCC
AACAAAGGATGTAACAAGTGCAACAAATCTTTTCCTGGAGATGTTACCTG
CAAGAATTATGGCGGTTTTGATACAGAGAATTGGACAGCGCGGACAGACC
AAGAACACCGGAGGCAAATGCAAGATATAATGAATGCAGGAACTAAAGGT
GATCGTCAAAAGCTAGAAACAGATTACGGGACCAAGTATTCAATTTTTGC
CAAACTACCatattttgatttcatatcCATGACTATAATAGATCCTATGC
ATAATCTCTTTTTGGGTACTGCGAAGCGAATGATTCAAGTCTGGAAAGAT
GAAGGCTTCATAACCAAACAAAATACTCATTTGATACAAGAACGTATCGA
CTCAATAGAATGTTCAAACGATGTTGGGAAGCTACCAAGCAAGTTTGATG
ACTTCTCATTTGCCTCTTTTACCGCAGACGAATTAAAGAATTGGAcattg
attttttccttgttcGTATTGAAAGGCATCGTCCCAGAGGAACACCTTAA
GTGCTGGCGACTATTTGTCATTTCATGCGTTTATCTTTGCAACCAAGTAA
TTACGGTGGAAGATCTGACCGTCGCCGATGatttccttttaaaattttgt
aaagCTTTTGAAAGACTGTATGGCAGTGATGAAGTTACTCCCAATATACA
TTTACACTGTCACCTTATCAATTGCGTCAAACAATATGGACCAATCTATG
GATTTTGGTTGTTCAGCTTCGAGCGCTACAATGGCATGCTTGAACGAATG
CCAACAAACAAGAAAGATATCGAAATACAACTGATGCGTAGGTTTGAAAG
GGACTTGCAAGCCCAAAACATTccctttcctgaaatttttaagGAAGAGT
TTCTCCCTCTTTTTGGAGGTATTCAAAATTCANGatttccttttaaaatt
ttgtaaagCTTTTGAAAGACTGTATGGCAGTGATGAAGTTACTCCCAATA
TACATTTACACTGTCACCTTATCAATTGCGTCAAACAATATGGACCAATC
TATGGATTTTGGTTGTTCAGCTTCGAGCGCTACAATGGCATGCTTGAACG
AATGCCAACAAACAAGAAAGATATCGAAATACAACTGATGCGTAGGTTTG
AAAGGGACTTACAAGCCCAAAACATTccctttcctgaaatttttaagGAA
GAGTTTCTCCCTCTTTTTGGAGGTATCCAAAATTCTGTTCAACGTGGATC
GCTTGGAATGATCGGATCTGATGTCCAAACACTGTTAATGTCATCCAAGA
AAACGAATTACAGCGGTCCTTTGCCTTGGTCGGATTTATCGAACATACAG
TTAAAGAGAAATCCAACGATTTACCAATTAACACCGAGGGAAATTGAATG
TCTTGAATCGATGTACAAGTCTATGTACCCGGAAAAAAACATTAATGTCC
CCAGTGCTTCTTTTAAGTCATTAGAGGTTGTATGTAATGGGGTTTTATAC
GGTTCTGTAACTTCTCGTAGCATTAGAGCAAGCAACGTAACTGCTTATTG
GTGTGGGGTTGATGGGAATATCCAATCTTTTGACATAATGTACCATTCTG
CTAGACCTgggaaaattctcttttttttgaaacattctGTCGTATTAGAT
GGACGATACGTCGATCATGTTCTTGCTCGTGTTGATTGGTTTTTGGAGTC
TGGTTACGATGGAAATGTTATTTATGGCAAACCGATCACGCTTTTTAGAG
ACAATTTGTTTGAAATCACCGGCAGTGCATCTTTTTTACCTGTACAGCGT
ATCTTTAGTAAATTCATATCggcaaaaacaaacattgatGGTAACGATAC
TCTTGTTGTCATTCCTAGGATTCGACATTTGAATATTTGACATTTGAACT
GCTTAGTTTAgtctttgttttctttgtttgtttacaCATTTCCGATAAAT
GGACTTCCAAAGTATGATTTCTTAAGCAGCTCTTTTAAAATACTTTGTAT
TAGTCAAATAACGGCCCTTTTTGCCCAGTTTTGTCTCAGTAAA Run BLAST on NCBI protein sequence of TCONS_00043729-protein >TCONS_00043729-protein ID=TCONS_00043729-protein|Name=TCONS_00043729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MLERMPTNKKDIEIQLMRRFERDLQAQNIPFPEIFKEEFLPLFGGIQNSV
QRGSLGMIGSDVQTLLMSSKKTNYSGPLPWSDLSNIQLKRNPTIYQLTPR
EIECLESMYKSMYPEKNINVPSASFKSLEVVCNGVLYGSVTSRSIRASNV
TAYWCGVDGNIQSFDIMYHSARPGKILFFLKHSVVLDGRYVDHVLARVDW
FLESGYDGNVIYGKPITLFRDNLFEITGSASFLPVQRIFSKFISAKTNID
GNDTLVVIPRIRHLNI Run BLAST on NCBI transcript from alignment at sc0004512:4166..6558 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043729 ID=TCONS_00043729|Name=TCONS_00043729|organism=Clytia hemisphaerica|type=transcript|length=2393bp|location=Sequence derived from alignment at sc0004512:4166..6558 (Clytia hemisphaerica)
TTTACTGAGACAAAACTGGGCAAAAAGGGCCGTTATTTGACTAATACAAA
GTATTTTAAAAGAGCTGCTTAAGAAATCATACTTTGGAAGTCCATTTATC
GGAAATGtgtaaacaaacaaagaaaacaaagacTAAACTAAGCAGTTCAA
ATGTCAAATATTCAAATGTCGAATCCTAGGAATGACAACAAGAGTATCGT
TACCatcaatgtttgtttttgccGATATGAATTTACTAAAGATACGCTGT
ACAGGTAAAAAAGATGCACTGCCGGTGATTTCAAACAAATTGTCTCTAAA
AAGCGTGATCGGTTTGCCATAAATAACATTTCCATCGTAACCAGACTCCA
AAAACCAATCAACACGAGCAAGAACATGATCGACGTATCGTCCATCTAAT
ACGACagaatgtttcaaaaaaaagagaattttcccAGGTCTAGCAGAATG
GTACATTATGTCAAAAGATTGGATATTCCCATCAACCCCACACCAATAAG
CAGTTACGTTGCTTGCTCTAATGCTACGAGAAGTTACAGAACCGTATAAA
ACCCCATTACATACAACCTCTAATGACTTAAAAGAAGCACTGGGGACATT
AATGTTTTTTTCCGGGTACATAGACTTGTACATCGATTCAAGACATTCAA
TTTCCCTCGGTGTTAATTGGTAAATCGTTGGATTTCTCTTTAACTGTATG
TTCGATAAATCCGACCAAGGCAAAGGACCGCTGTAATTCGTTTTCTTGGA
TGACATTAACAGTGTTTGGACATCAGATCCGATCATTCCAAGCGATCCAC
GTTGAACAGAATTTTGGATACCTCCAAAAAGAGGGAGAAACTCTTCctta
aaaatttcaggaaagggAATGTTTTGGGCTTGTAAGTCCCTTTCAAACCT
ACGCATCAGTTGTATTTCGATATCTTTCTTGTTTGTTGGCATTCGTTCAA
GCATGCCATTGTAGCGCTCGAAGCTGAACAACCAAAATCCATAGATTGGT
CCATATTGTTTGACGCAATTGATAAGGTGACAGTGTAAATGTATATTGGG
AGTAACTTCATCACTGCCATACAGTCTTTCAAAAGctttacaaaatttta
aaaggaaatCNTGAATTTTGAATACCTCCAAAAAGAGGGAGAAACTCTTC
cttaaaaatttcaggaaagggAATGTTTTGGGCTTGCAAGTCCCTTTCAA
ACCTACGCATCAGTTGTATTTCGATATCTTTCTTGTTTGTTGGCATTCGT
TCAAGCATGCCATTGTAGCGCTCGAAGCTGAACAACCAAAATCCATAGAT
TGGTCCATATTGTTTGACGCAATTGATAAGGTGACAGTGTAAATGTATAT
TGGGAGTAACTTCATCACTGCCATACAGTCTTTCAAAAGctttacaaaat
tttaaaaggaaatCATCGGCGACGGTCAGATCTTCCACCGTAATTACTTG
GTTGCAAAGATAAACGCATGAAATGACAAATAGTCGCCAGCACTTAAGGT
GTTCCTCTGGGACGATGCCTTTCAATACgaacaaggaaaaaatcaatgTC
CAATTCTTTAATTCGTCTGCGGTAAAAGAGGCAAATGAGAAGTCATCAAA
CTTGCTTGGTAGCTTCCCAACATCGTTTGAACATTCTATTGAGTCGATAC
GTTCTTGTATCAAATGAGTATTTTGTTTGGTTATGAAGCCTTCATCTTTC
CAGACTTGAATCATTCGCTTCGCAGTACCCAAAAAGAGATTATGCATAGG
ATCTATTATAGTCATGgatatgaaatcaaaatatGGTAGTTTGGCAAAAA
TTGAATACTTGGTCCCGTAATCTGTTTCTAGCTTTTGACGATCACCTTTA
GTTCCTGCATTCATTATATCTTGCATTTGCCTCCGGTGTTCTTGGTCTGT
CCGCGCTGTCCAATTCTCTGTATCAAAACCGCCATAATTCTTGCAGGTAA
CATCTCCAGGAAAAGATTTGTTGCACTTGTTACATCCTTTGTTGGCGTTG
TGAGCTAGAAGAAAATATAGAGTTGGGAGATGGGAGCTGGAAATTTTGGA
CTTTCAGGTGGAGAAAATACCGTCGGTTAAGTTGGGACTAGAAAACATAC
ATGAATCCAGAGAAATGAGATGGAATAGAAAACGAGGATCTCTGAATACC
CAAAGTGTTCTCGTCGTTCCTATTGAAAAGCCTTTGATTAGGTCGTTAGA
AAAAGTTCAAGAAAAGACGGCTCGtcctaaaatttggctggtTTCTACAT
GTTATGATCATAAAAGTGAATAGACGTTTTTCGTTTTTGACAGATTACTT
TCTAAACCTTCAGTATGaagtaacaaattttacaccaTTTTGTTACCTGA
AAAGTTCTCATCACAATAATATTAAATTGATATTatataattg Coding sequence (CDS) from alignment at sc0004512:4166..6558 >TCONS_00043729 ID=TCONS_00043729|Name=TCONS_00043729|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0004512:4166..6558 (Clytia hemisphaerica)
TCAAATATTCAAATGTCGAATCCTAGGAATGACAACAAGAGTATCGTTAC
CatcaatgtttgtttttgccGATATGAATTTACTAAAGATACGCTGTACA
GGTAAAAAAGATGCACTGCCGGTGATTTCAAACAAATTGTCTCTAAAAAG
CGTGATCGGTTTGCCATAAATAACATTTCCATCGTAACCAGACTCCAAAA
ACCAATCAACACGAGCAAGAACATGATCGACGTATCGTCCATCTAATACG
ACagaatgtttcaaaaaaaagagaattttcccAGGTCTAGCAGAATGGTA
CATTATGTCAAAAGATTGGATATTCCCATCAACCCCACACCAATAAGCAG
TTACGTTGCTTGCTCTAATGCTACGAGAAGTTACAGAACCGTATAAAACC
CCATTACATACAACCTCTAATGACTTAAAAGAAGCACTGGGGACATTAAT
GTTTTTTTCCGGGTACATAGACTTGTACATCGATTCAAGACATTCAATTT
CCCTCGGTGTTAATTGGTAAATCGTTGGATTTCTCTTTAACTGTATGTTC
GATAAATCCGACCAAGGCAAAGGACCGCTGTAATTCGTTTTCTTGGATGA
CATTAACAGTGTTTGGACATCAGATCCGATCATTCCAAGCGATCCACGTT
GAACAGAATTTTGGATACCTCCAAAAAGAGGGAGAAACTCTTCcttaaaa
atttcaggaaagggAATGTTTTGGGCTTGTAAGTCCCTTTCAAACCTACG
CATCAGTTGTATTTCGATATCTTTCTTGTTTGTTGGCATTCGTTCAAGCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043729-exon-sc0004512-1491911889:4166..6558 | TCONS_00043729-exon-sc0004512-1491911889:4166..6558 | Clytia hemisphaerica | exon |
| TCONS_00043729-exon-sc0004512-1510915933:4166..6558 | TCONS_00043729-exon-sc0004512-1510915933:4166..6558 | Clytia hemisphaerica | exon |
| TCONS_00043729-exon-sc0004512-1575043694:4166..6558 | TCONS_00043729-exon-sc0004512-1575043694:4166..6558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004512 | supercontig | sc0004512:4166..6558 . |
Blast
The following BLAST results are available for this feature:
|
