TCONS_00043728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043728
Unique NameTCONS_00043728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043728 ID=TCONS_00043728|Name=TCONS_00043728|organism=Clytia hemisphaerica|type=transcript|length=824bp
GTCCTATTATCCTTTTTTCCGTTTCACAAGTAATCATTCCATCTAATATT
AAGTCAAAGTACGTTGGATAACCAGTGTGAATAAAGTTCGTTTTCTTAAA
TCTTAAAGTTATTTCGTGTATTGTTTTTATATTATCTGGAAGTACTTGTA
CGTAGTTTTGTTATGTTATGCTTTTTCAAAACCCCCTCTTCTGCTTCTTA
ATTTCAGGAGATTTGTAACTATCTGTAACGAtgtgacacccctgtctcag
tcccccggtggagctttttccctcagtggggatgaaaatttctatcgaaa
ttccaatgcggatagaaaatctattgtttccagctaaaaaattccagtgg
ggatggttttgaagtgcaatttttttcgttcAACTTCCAATGGGGACAAA
ATCATAGAtcgatttcccagtggggatggaattttagggatttttttcca
ctggggacgattttggccaatttttccagtggggcaaggggtccaccggg
tctgtgacacaggggtgtaatgtgCAATCATGGTGCAATTCAGAGCTTGT
AATTTTGCAATTCTTTAAAGACTTCACCAGTAAATTGTTTTAAAACATAC
TTTGatgaaattattaaaattcaGGGTAAATTCGGCCACAGTATGCAGAA
CTGCAAGACTTTGTgaagagtttgaaaaatggtggATTTCTTGGGAGCAC
AAAGATCAAGAGGATTTATAAAGGGAGGGGTAGGGACTATGAATAGCCCC
TTTGTAAGATTTTTTcctaaaaagtttgaaattgttCCCAAACCTTAATA
TTCTGTgggcttttttgaaaaatc
Run BLAST on NCBI

transcript from alignment at sc0004512:3104..3927

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043728 ID=TCONS_00043728|Name=TCONS_00043728|organism=Clytia hemisphaerica|type=transcript|length=824bp|location=Sequence derived from alignment at sc0004512:3104..3927 (Clytia hemisphaerica)
gatttttcaaaaaagcccACAGAATATTAAGGTTTGGGaacaatttcaaa
ctttttaggAAAAAATCTTACAAAGGGGCTATTCATAGTCCCTACCCCTC
CCTTTATAAATCCTCTTGATCTTTGTGCTCCCAAGAAATccaccattttt
caaactcttcACAAAGTCTTGCAGTTCTGCATACTGTGGCCGAATTTACC
CtgaattttaataatttcatCAAAGTATGTTTTAAAACAATTTACTGGTG
AAGTCTTTAAAGAATTGCAAAATTACAAGCTCTGAATTGCACCATGATTG
cacattacacccctgtgtcacagacccggtggaccccttgccccactgga
aaaattggccaaaatcgtccccagtggaaaaaaatccctaaaattccatc
cccactgggaaatcgaTCTATGATTTTGTCCCCATTGGAAGTTgaacgaa
aaaaattgcacttcaaaaccatccccactggaattttttagctggaaaca
atagattttctatccgcattggaatttcgatagaaattttcatccccact
gagggaaaaagctccaccgggggactgagacaggggtgtcacaTCGTTAC
AGATAGTTACAAATCTCCTGAAATTAAGAAGCAGAAGAGGGGGTTTTGAA
AAAGCATAACATAACAAAACTACGTACAAGTACTTCCAGATAATATAAAA
ACAATACACGAAATAACTTTAAGATTTAAGAAAACGAACTTTATTCACAC
TGGTTATCCAACGTACTTTGACTTAATATTAGATGGAATGATTACTTGTG
AAACGGAAAAAAGGATAATAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027411XLOC_027411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043728-exon-sc0004512-1491911889:3104..3927TCONS_00043728-exon-sc0004512-1491911889:3104..3927Clytia hemisphaericaexon
TCONS_00043728-exon-sc0004512-1510915933:3104..3927TCONS_00043728-exon-sc0004512-1510915933:3104..3927Clytia hemisphaericaexon
TCONS_00043728-exon-sc0004512-1575043694:3104..3927TCONS_00043728-exon-sc0004512-1575043694:3104..3927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004512supercontigsc0004512:3104..3927 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173062	0.172908	0.130633	0	0.412574	0.774462	0.753306	1.18053	0.460587	0.42566	0.29232	0.462623	0.385308	0.398435	0.498879	0.496482	0.567869	0.472925	0.429261	0.59212	0.468187	0.635661	0.066534	0.362038	0.495491	0.942996	0.555491	0.986945	0.452005	0.595726
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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