TCONS_00043727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043727
Unique NameTCONS_00043727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043727 ID=TCONS_00043727|Name=TCONS_00043727|organism=Clytia hemisphaerica|type=transcript|length=247bp
cACCCTGGCCATCCCCCGTTCTATAGGCTGCTCGCATCCACTAACGAATC
CGTGCTTCTTttatactacctgcggttttgtagagatCTGCGATTCGGAC
TACCCGTTCTACGATTCTTTCCACCCCTCCCTATCCCTGACTTATTACCC
TAGCTGAGTATATTTTAGCTTTTTATTTTACATGTCTTAGTTCCATTTAG
TAGAGTCACTAATGGTTGAATTGGAACCTTTTTAGCGGATATGGTTG
Run BLAST on NCBI

transcript from alignment at sc0004512:2779..3025

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043727 ID=TCONS_00043727|Name=TCONS_00043727|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at sc0004512:2779..3025 (Clytia hemisphaerica)
CAACCATATCCGCTAAAAAGGTTCCAATTCAACCATTAGTGACTCTACTA
AATGGAACTAAGACATGTAAAATAAAAAGCTAAAATATACTCAGCTAGGG
TAATAAGTCAGGGATAGGGAGGGGTGGAAAGAATCGTAGAACGGGTAGTC
CGAATCGCAGatctctacaaaaccgcaggtagtataaAAGAAGCACGGAT
TCGTTAGTGGATGCGAGCAGCCTATAGAACGGGGGATGGCCAGGGTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027410XLOC_027410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043727-exon-sc0004512-1491911889:2779..3025TCONS_00043727-exon-sc0004512-1491911889:2779..3025Clytia hemisphaericaexon
TCONS_00043727-exon-sc0004512-1510915933:2779..3025TCONS_00043727-exon-sc0004512-1510915933:2779..3025Clytia hemisphaericaexon
TCONS_00043727-exon-sc0004512-1575043694:2779..3025TCONS_00043727-exon-sc0004512-1575043694:2779..3025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004512supercontigsc0004512:2779..3025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.804	3.13611	0.91033	5.3437	1.08424	3.42712	3.10101	5.80625	1.35503	4.19606	2.44368	1.60638	1.06943	1.11061	0	2.44968	1.81068	2.47452	0	0	0.777353	0	0.921851	0.838096	0	0.770403	1.10244	2.35312	0	0.909192
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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