TCONS_00043719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043719
Unique NameTCONS_00043719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043719 ID=TCONS_00043719|Name=TCONS_00043719|organism=Clytia hemisphaerica|type=transcript|length=531bp
TACACGTTTTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGA
ATgcctaaaaactaagaaacatctaagaaacatgctgaggctgagaatga
gaaaataacattttctaattcagtttttttaagaaccttccaatccagcc
ttccataaGGCTGATtacgtcaaaaagtttagaaacatgtaagtaTGGAA
CGCCATAACTGCCAAAAGTGTCTCACTCGCACGATAGCTCGGTAGTCTGG
CTGTTTCACTCGGTAGGTTGATTGTTTTGTTCGGTGGTTCGATCATTTTG
TTCGGTGGTTTGATCATTTTGTTCGGTTGTTCGATCATTTTGTTCGGTGC
TTGCACCGTTTTGTCCGGTATTTTAACCGTTTTACTTGGTGTTTTGGCCA
TAATGTTCGGTGCTTTGATCGTTTTGTTTGGTTTTTGCACCATTATATTG
AGTGCTCCAATCATTTCGTTCGGTAATTTAATCATTTCGTTCGGTAATTT
AATCGTTAGGTAGTGGTGCGACCATTAGGTG
Run BLAST on NCBI

protein sequence of TCONS_00043719-protein

>TCONS_00043719-protein ID=TCONS_00043719-protein|Name=TCONS_00043719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MIKLPNEMIGALNIMVQKPNKTIKAPNIMAKTPSKTVKIPDKTVQAPNKM
IEQPNKMIKPPNKMIEPPNKTINLPSETARLPSYRASETLLAVMAFHTYM
FLNFLT
Run BLAST on NCBI

transcript from alignment at sc0004506:2678..3208

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043719 ID=TCONS_00043719|Name=TCONS_00043719|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0004506:2678..3208 (Clytia hemisphaerica)
CACCTAATGGTCGCACCACTACCTAACGATTAAATTACCGAACGAAATGA
TTAAATTACCGAACGAAATGATTGGAGCACTCAATATAATGGTGCAAAAA
CCAAACAAAACGATCAAAGCACCGAACATTATGGCCAAAACACCAAGTAA
AACGGTTAAAATACCGGACAAAACGGTGCAAGCACCGAACAAAATGATCG
AACAACCGAACAAAATGATCAAACCACCGAACAAAATGATCGAACCACCG
AACAAAACAATCAACCTACCGAGTGAAACAGCCAGACTACCGAGCTATCG
TGCGAGTGAGACACTTTTGGCAGTTATGGCGTTCCAtacttacatgtttc
taaactttttgacgtaATCAGCCttatggaaggctggattggaaggttct
taaaaaaactgaattagaaaatgttattttctcattctcagcctcagcat
gtttcttagatgtttcttagtttttaggcATTCTGAGCCTCATGTTTCTT
AAAAGTGTGTTTCTTAAAAAAAAAACGTGTA

Coding sequence (CDS) from alignment at sc0004506:2678..3208

>TCONS_00043719 ID=TCONS_00043719|Name=TCONS_00043719|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0004506:2678..3208 (Clytia hemisphaerica)
ATGATTAAATTACCGAACGAAATGATTGGAGCACTCAATATAATGGTGCA
AAAACCAAACAAAACGATCAAAGCACCGAACATTATGGCCAAAACACCAA
GTAAAACGGTTAAAATACCGGACAAAACGGTGCAAGCACCGAACAAAATG
ATCGAACAACCGAACAAAATGATCAAACCACCGAACAAAATGATCGAACC
ACCGAACAAAACAATCAACCTACCGAGTGAAACAGCCAGACTACCGAGCT
ATCGTGCGAGTGAGACACTTTTGGCAGTTATGGCGTTCCAtacttacatg
tttctaaactttttgacgtaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027402XLOC_027402Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043719-proteinTCONS_00043719-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043719-exon-sc0004506-1491911889:2678..3208TCONS_00043719-exon-sc0004506-1491911889:2678..3208Clytia hemisphaericaexon
TCONS_00043719-exon-sc0004506-1510915933:2678..3208TCONS_00043719-exon-sc0004506-1510915933:2678..3208Clytia hemisphaericaexon
TCONS_00043719-exon-sc0004506-1575043694:2678..3208TCONS_00043719-exon-sc0004506-1575043694:2678..3208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004506supercontigsc0004506:2678..3208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.57638	0.231346	1.09925	0.180312	0.22545	0.242108	1.36083	0.874838	0.815866	0.121723	1.19233	0.677761	0.472334	0.84165	1.07461	0.812093	0.344099	1.14385	0.518949	1.01195	0.614145	0.535835	0.130029	1.10768	0.364485	0.975766	0.742081	0.182085	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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