TCONS_00043718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043718
Unique NameTCONS_00043718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043718 ID=TCONS_00043718|Name=TCONS_00043718|organism=Clytia hemisphaerica|type=transcript|length=318bp
GTACGAATATATGTTTGACctgaatattcaaaattttaatgtaatgggtt
taaaaaaaagatacatTGATACATATCATACATGTCTCTCTTGCTTACTA
TAGTAATTAACTTGTATATGAACAAggagaaaaatacattttacatAAGA
TTTCgagagttttttcatttttcatatcgtATCGTATTGAAATGTTTCTA
ATTATTATATGCACCAAGCATTACTTGATCGTTGGGCATGGCACAGATTT
CTATTAATTTTGTAATGAGCACATTTAAACTGTCTTCAACATTCAACTGT
TTTTGTGACCATGATGCA
Run BLAST on NCBI

transcript from alignment at sc0004504:2636..2953

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043718 ID=TCONS_00043718|Name=TCONS_00043718|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at sc0004504:2636..2953 (Clytia hemisphaerica)
TGCATCATGGTCACAAAAACAGTTGAATGTTGAAGACAGTTTAAATGTGC
TCATTACAAAATTAATAGAAATCTGTGCCATGCCCAACGATCAAGTAATG
CTTGGTGCATATAATAATTAGAAACATTTCAATACGATacgatatgaaaa
atgaaaaaactctcGAAATCTTatgtaaaatgtatttttctccTTGTTCA
TATACAAGTTAATTACTATAGTAAGCAAGAGAGACATGTATGATATGTAT
CAatgtatcttttttttaaacccattacattaaaattttgaatattcagG
TCAAACATATATTCGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027401XLOC_027401Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043718-exon-sc0004504-1491911889:2636..2953TCONS_00043718-exon-sc0004504-1491911889:2636..2953Clytia hemisphaericaexon
TCONS_00043718-exon-sc0004504-1510915933:2636..2953TCONS_00043718-exon-sc0004504-1510915933:2636..2953Clytia hemisphaericaexon
TCONS_00043718-exon-sc0004504-1575043694:2636..2953TCONS_00043718-exon-sc0004504-1575043694:2636..2953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004504supercontigsc0004504:2636..2953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325432	0.421169	0.368471	0	0	0.405161	0.469328	0.391696	1.27486	1.18151	0	0.80526	0.655972	1.12385	0.758448	0.752944	0.361884	0.751201	0	0.362003	2.50183	0	0	2.38495	0	0	4.17003	1.13584	1.50238	0.597928
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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