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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043708 ID=TCONS_00043708|Name=TCONS_00043708|organism=Clytia hemisphaerica|type=transcript|length=1618bp
GCGGATATATAAATTGATATTTCTTCTAAAAAGACTGATGAATAGGTCAC
GAAAACAGAAGAACAAGTGCCGATAGATGGATAAGATGTCAGTCTAACAG
AGTAATCAAAATGTACTTGACATACTTGTTCTTTCTGAGTAGATTAGCAT
TAGCGTTGACTCAATGGTACGAACCATCCGCAAAAGAAGTCGTCAtttca
caacaacaacaacaacaacaacattcaTCAAATGAAGCTTTTTCTGCAAG
GTCAACCATCGAATGTACCTTGAAATGTCAATTGACAGCAACAAtacttg
aaatcgaaagtgtttacgtagagaaaaatcagaaatgtttttgtttatcc
CCTGGGGATAATGAGATCGAAGCAAGCACCGATGATGGTGTCGTAGCCCA
CTCAACGCCACACAAACTTTGTCCAAAGAAATCATGCAAAGAAGTAAAAA
AGGTTTGTCCGAAATGTGGGTCAGGGTTTTACACCATAGAATTTGATGAA
CCAACAAAAGTTTACTGTGACATGACCACAGAACAAGGCGGATGGTTGAT
GGTTGGCAATGTCACAGTCACATCATCTCCTTTCTCTACTTCCAACCTTC
AACAAAACACTCTTTCCGATCTCCATAATGTACAAGGTGGTGAATTCTTA
TTGAAGGTGGCGCTCCTCACAGACCTTCAGACGTACACAGGCTTCACTGA
AGTGCGCGTCATGTGTTACAAAACTGGCCACAAAAGAAAAGTACATGCTA
TCGTTTACGGAGAGCAAGTCATGCAGATGATTGTTGGAGTGAGTTATTTC
CATGGCTACTGCCAACAGATCCGTTTTTTAAGCGATGACACGTCTTCATT
ACGTCAGAATTACGGTTGTAGTGACCTCAGAGGTGGTTATTGGAATGAGA
AGTCCTTGTACGAGAGAGTGATTTGGGTTTATAGCGGTCCCTTGGTGTGG
TTGACGTCCGATGGTGCGCGCGCTGAGTGCGACGATATTTCGTACTTAGG
CGGTTTCAGCAAATACggtcaatttcaattttatgtgCGTTGAACGAAac
agatcttatcggagtttttggcttttctaaaaaagcgatgcattgcggta
ttgtttcgggagtattgcaatagaattccctcgacgCAAGAAcaataatc
aaaacatttttaatgaaactCTCCGAAACAATTTGACAGATTTAGACAAT
TTAGGAATTCTTTTAGGAAAGACCTCTGACAAGGTCGCAAAACTCGAGTA
ATGAACTTCCTCCCAAGAAATTCCACATTGTAATCTCACTCACCGAGact
ttattaaataattttaggTTAGTATTGTTGTATTTGTTGATTGTTATTTG
TTAAATAAcgtagaaattaaaaaaaaacaccaattttCCAGTTTTCTGAA
CACTGCACCAatatttaaaactattttaaattGTAAATTGAATGTAGTTT
TTCGGTATATAAGACAAAAATGGTATTAACTTTCAATGTCTGCTTCTTGT
CTCGTATtttcgttttattttttttcttccgcAGAGACAGAGTTTGTTAT
CTCAAATAACTAAACTTTTAATGGATGCAGTATCTTTAAGTTAAGACAAC
cgagttttgttttgttta Run BLAST on NCBI transcript from alignment at sc0004495:2182..4902- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043708 ID=TCONS_00043708|Name=TCONS_00043708|organism=Clytia hemisphaerica|type=transcript|length=2721bp|location=Sequence derived from alignment at sc0004495:2182..4902- (Clytia hemisphaerica)
GCGGATATATAAATTGATATTTCTTCTAAAAAGACTGATGAATAGGTCAC
GAAAACAGAAGAACAAGTGCCGATAGATGGATAAGATGTCAGTCTAACAG
AGTAATCAAAATGTACTTGACATACTTGTTCTTTCTGAGTAGATTAGCAT
TAGCGTTGACTCAATGGTACGAACCATCCGCAAAAGAAGTCGTCATTTCA
CAACAACAACAACAACAACAACATTCATCAAATGAAGCTTTTTCTGCAAG
GTCAACCATCGAATGTACCTTGAAATGTCAATTGACAGCAACAATACTTG
AAATCGAAAGTGTTTACGTAGAGAAAAATCAGAAATGTTTTTGTTTATCC
CCTGGGGATAATGAGATCGAAGCAAGCACCGATGATGGTGTCGTAGCCCA
CTCAACGCCACACAAAGTAATTTACTTTTCTTTGAAAATATAGTGCTCTG
AATTATCTTTTCAACGGCATAATGTGCAAAAATTGAAGCAATCGTTGAAA
AATGACATACAAAACAAAGATTAGAGTGCACACTCACAGCGGTTTTTCCC
AAGGATTTGACGGAGCGATGTCTACTTATGATTTCTTTTTCCAGGGGTGC
AATGAAAAGTTCTTTCATTATCGAAGGGGTCAAAGAAAATTGAAGAATGG
AATTTGCAGGGATCTAAATTTATTTTCCAGGAAGTAAAAAGTTATTTTAG
ACGTACAATCTTTCGCGAGGTCGGAATATCGTGAAATTTACGACATTTAC
TTTCGCGAATTTGACGAAAAAATATGTTTCGAAGAAACGAACAAACTTTC
GCGAATCAAAACAGACAAAAAATGGCTTAGAGGGACAAATACTTCTTGAT
TGGAAAAAATGAAATATTTATAGATTTAAGGCTAAGAATCACAAAAGAAT
TAAGAACAGCAGCAGTTGTGAAGTTGTTTGGAGGGCGTTGTAATCTGTTA
GATTACCTTTGCCCATGAGCAAAAGCTATCTGTTTCCCATAAAAAAAGTG
TCCAGCAGAATAATAAGGAGTAATCTTCCTTTCTTATAGCTTTGTCCAAA
GAAATCATGCAAAGAAGTAAAAAAGGTTTGTCCGAAATGTGGGTCAGGGT
TTTACACCATAGAATTTGATGAACCAACAAAAGTTTACTGTGACATGACC
ACAGAACAAGGTAAGAAAAAGAAATGATTTCAATATAAATACAACAGACA
GAAAGATACATGAACCCCCCAGAGATTTTTGTGGTGGCGTTTTTAATGTT
CGTGATTTAAGATATTAAAATGCGTGATTGCGTGATCGGAGGAATTAACG
TGATCGTGGTAGAAAGGAAATTTAGCTCGTGATTGCTTGATTTGAAAGGT
GACTGGGGGGCCTCATATACAGTCAGGCATACAAACAACAAAACTGGAAA
TAAATAAAAAACTTACATAAAAAACATGTATGTATTTTGGAAGATACCAT
AAAAAAGGTGAAAGTAAAAAAAAGATCTGATCTGCCATCTGACTCCATTA
AGATAGACAGATAGACAGACAGATAAACAGTGTGAGATTTTCTTTCAAAA
TGATAGATCAAACTAACAAAAATGAACACTAATTTGATAATAAATGGATA
TAAAAAAAATTCAATCTTGTTATTTATTTTCATTCTGTAGGCGGATGGTT
GATGGTTGGCAATGTCACAGTCACATCATCTCCTTTCTCTACTTCCAACC
TTCAACAAAACACTCTTTCCGATCTCCATAATGTACAAGGTGGTGAATTC
TTATTGAAGGTGGCGCTCCTCACAGACCTTCAGACGTACACAGGCTTCAC
TGAAGTGCGCGTCATGTGTTACAAAACTGGCCACAAAAGAAAAGTACATG
CTATCGTTTACGGAGAGCAAGTCATGCAGATGATTGTTGGAGTGAGTTAT
TTCCATGGCTACTGCCAACAGATCCGTTTTTTAAGCGATGACACGTCTTC
ATTACGTCAGAATTACGGTTGTAGTGACCTCAGAGGTGGTTATTGGAATG
AGAAGTCCTTGTACGAGAGAGTGATTTGGGTTTATAGCGGTCCCTTGGTG
TGGTTGACGTCCGATGGTGCGCGCGCTGAGTGCGACGATATTTCGTACTT
AGGCGGTTTCAGCAAATACGGTCAATTTCAATTTTATGTGCGTTGAACGA
AACAGATCTTATCGGAGTTTTTGGCTTTTCTAAAAAAGCGATGCATTGCG
GTATTGTTTCGGGAGTATTGCAATAGAATTCCCTCGACGCAAGAACAATA
ATCAAAACATTTTTAATGAAACTCTCCGAAACAATTTGACAGATTTAGAC
AATTTAGGAATTCTTTTAGGAAAGACCTCTGACAAGGTCGCAAAACTCGA
GTAATGAACTTCCTCCCAAGAAATTCCACATTGTAATCTCACTCACCGAG
ACTTTATTAAATAATTTTAGGTTAGTATTGTTGTATTTGTTGATTGTTAT
TTGTTAAATAACGTAGAAATTAAAAAAAAACACCAATTTTCCAGTTTTCT
GAACACTGCACCAATATTTAAAACTATTTTAAATTGTAAATTGAATGTAG
TTTTTCGGTATATAAGACAAAAATGGTATTAACTTTCAATGTCTGCTTCT
TGTCTCGTATTTTCGTTTTATTTTTTTTCTTCCGCAGAGACAGAGTTTGT
TATCTCAAATAACTAAACTTTTAATGGATGCAGTATCTTTAAGTTAAGAC
AACCGAGTTTTGTTTTGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043708-exon-sc0004495-1575043694:4487..4902 | TCONS_00043708-exon-sc0004495-1575043694:4487..4902 | Clytia hemisphaerica | exon |
| TCONS_00043708-exon-sc0004495-1575043694:3743..3863 | TCONS_00043708-exon-sc0004495-1575043694:3743..3863 | Clytia hemisphaerica | exon |
| TCONS_00043708-exon-sc0004495-1575043694:2182..3262 | TCONS_00043708-exon-sc0004495-1575043694:2182..3262 | Clytia hemisphaerica | exon |
| TCONS_00043708-exon-sc0004495-1510915933:4487..4902 | TCONS_00043708-exon-sc0004495-1510915933:4487..4902 | Clytia hemisphaerica | exon |
| TCONS_00043708-exon-sc0004495-1510915933:3743..3863 | TCONS_00043708-exon-sc0004495-1510915933:3743..3863 | Clytia hemisphaerica | exon |
| TCONS_00043708-exon-sc0004495-1510915933:2182..3262 | TCONS_00043708-exon-sc0004495-1510915933:2182..3262 | Clytia hemisphaerica | exon |
| TCONS_00043708-exon-sc0004495-1491911889:4487..4902 | TCONS_00043708-exon-sc0004495-1491911889:4487..4902 | Clytia hemisphaerica | exon |
| TCONS_00043708-exon-sc0004495-1491911889:3743..3863 | TCONS_00043708-exon-sc0004495-1491911889:3743..3863 | Clytia hemisphaerica | exon |
| TCONS_00043708-exon-sc0004495-1491911889:2182..3262 | TCONS_00043708-exon-sc0004495-1491911889:2182..3262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004495 | supercontig | sc0004495:2182..4902 - |
Blast
The following BLAST results are available for this feature:
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