TCONS_00043696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043696
Unique NameTCONS_00043696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043696 ID=TCONS_00043696|Name=TCONS_00043696|organism=Clytia hemisphaerica|type=transcript|length=1394bp
TGATTAGTTTCacctttgttgttttttcgtttttgtgTATTTTAGAATAT
GTATTTTAGAATATCGATATTAGTATTTAAAGGGGGGAGCTGatatttct
ttgatgttttttgaaaatccccCTTCTCTAGCATCAATCAAATCAACCAT
TAAAAAATCAATGTATTTCAGTCATTTGAAGAATGTTCccccttttgaaa
aatttatcttATCCCCTATGAATGCTAAACACTTATCTTGTTAACCTGCT
TGATATCATGGTGTTATAGCACAGTCCCTTTTCTGCTCAGTTGACAGCAT
CGGAAAGATTTTCATTAATGCAGTATCGTCGACTTTTTAGTGAGAACATT
TGATAGTGTGGGGTATACAATCAGAGAATAATATTGATCCATTGTTTTTG
GACTGTTCATTGGTAcactccttctcacagacccgctgggacctcttccc
actggaaaaattggacaaaatatcgtccccggtggaaaatcatcCTCCAA
TTTTTNtcccactggaaaaattggacaaaatatcgtccccggtggaaaat
catcctccaatttttgtgcCCACTGAACATactcaaataaaccaatcctc
gctacaaaatattatgctattttttccatccccaaaacaaaataattgaa
atccccatccataaaaatatgggaatatcaatgccATTGAACTTTNTGTG
CCCACTGAACATactcaaataaaccaatcctcgctacaaaatattatgct
attttttccatccccaaaacaaaataattgaaatcccctgccataaaaat
atgggaatatcaatgccATTGAacttcagtccgttatttttatacccact
ggctgaaaaaatcctaccgggtcttgATGAAAAGGGGTGTATTGGTTCAT
TGAGTGACCGCTTATCcttgttttctttttccatttAGCTACAGTCATTT
TTGGAGCAACGTCTTTCAGAAATGAGGCTAAACGCTGATATGATCACAGT
CTATGAGTTTCAATCAGCGCCAGCCTTGCTTCAGATTCAAACCATCGAAA
CTTTGCAAAGCATGTTGGGAAATGTGACGTCAGTATTACAAAGCTTAACC
TCCGTCAAAATGCAAAATTTATACTTAATTAAAAGTTCACCAAGGTATGT
GGACCGTATCTCCGAATCAATGGAACAGAAGCTTCGTGTCTCCGAAAAAC
TACTGAGTCAGATTACGTCACTACGCGAGCGATCACAAGAAGCGGTCAAA
ACACAAGCAGATACTGAACCAAAGTTAGCGCTTATCgtgaaaaagacaaa
agaactCCAATCGCAGGTCGAAAGCGAGATATCAAGTCGTTATAAAGATC
GTAAAGTCAACATCATGGGAGAAATTAACACTATTTAGAGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00043696-protein

>TCONS_00043696-protein ID=TCONS_00043696-protein|Name=TCONS_00043696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MRLNADMITVYEFQSAPALLQIQTIETLQSMLGNVTSVLQSLTSVKMQNL
YLIKSSPRYVDRISESMEQKLRVSEKLLSQITSLRERSQEAVKTQADTEP
KLALIVKKTKELQSQVESEISSRYKDRKVNIMGEINTI
Run BLAST on NCBI

transcript from alignment at sc0004480:1..2867-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043696 ID=TCONS_00043696|Name=TCONS_00043696|organism=Clytia hemisphaerica|type=transcript|length=2867bp|location=Sequence derived from alignment at sc0004480:1..2867- (Clytia hemisphaerica)
TGATTAGTTTCACCTTTGTTGTTTTTTCGTTTTTGTGTATTTTAGAATAT
GTATTTTAGAATATCGATATTAGTATTTAAAGGGGGGAGCTGATATTTCT
TTGATGTTTTTTGAAAATCCCCCTTCTCTAGCATCAATCAAATCAACCAT
TAAAAAATCAATGTATTTCAGTCATTTGAAGAATGTTCCCCCTTTTGAAA
AATTTATCTTATCCCCTATGAATGCTAAACACTTATCTTGTTAACCTGCT
TGATATCATGGTGTTATAGCACAGTCCCTTTTCTGCTCAGTTGACAGCAT
CGGAAAGATTTTCATTAATGCAGTATCGTCGACTTTTTAGTGAGAACATT
TGATAGTGTGGGGTATACAATCAGAGAATAATATTGATCCATTGTTTTTG
GACTGTTCATTGGTACACTCCTTCTCACAGACCCGCTGGGACCTCTTCCC
ACTGGAAAAATTGGACAAAATATCGTCCCCGGTGGAAAATCATCCTCCAA
TTTTTNTCCCACTGGAAAAATTGGACAAAATATCGTCCCCGGTGGAAAAT
CATCCTCCAATTTTTGTGCCCACTGAACATACTCAAATAAACCAATCCTC
GCTACAAAATATTATGCTATTTTTTCCATCCCCAAAACAAAATAATTGAA
ATCCCCATCCATAAAAATATGGGAATATCAATGCCATTGAACTTTNTGTG
CCCACTGAACATACTCAAATAAACCAATCCTCGCTACAAAATATTATGCT
ATTTTTTCCATCCCCAAAACAAAATAATTGAAATCCCCTGCCATAAAAAT
ATGGGAATATCAATGCCATTGAACTTCAGTCCGTTATTTTTATACCCACT
GGCTGAAAAAATCCTACCGGGTCTTGATGAAAAGGGGTGTATTGGTTCAT
TGAGTGACCGCTTATCCTTGTTTTCTTTTTCCATTTAGCTACAGTCATTT
TTGGAGCAACGTCTTTCAGAAATGAGGCTAAACGCTGATATGATCACAGT
CTATGAGGTATTACTATATTTCTGTTATAATAACTGTTATTTATAATCTT
TCACATGGTTGCATCATCAATAATTACTCTGTACTAGAGTTACCTCAAGT
TTATCGTTTCGTACTACACTCTGTGCGTATTGTCTGTTTGATAAAAATAA
TTCCCGTACGGAAACCTCTGCGATGAAGTATGATTTATAAATAGCAACGC
TTCTCTTGTCGTCTTCCCTCTCTCACCTACACTCCATCGCAGCGGTCGGT
TTGAAAAATCTCAAATCGGAAAAGACAATGACAACAGACCCTCTACGGCA
ATGAATTTTGAAATTAGCCGTAGATATCGGGTCTGTGTACAGACTAATCA
ATAATGAGCAGGCTCCGATTTTCAGAAATTCTACATCCTAAGATCTTCCA
CATTTTAATTTTTTTTCTCCCAAATACACAGTACAACTAACTTAAGCCAA
AGTAACTTTTTAACACCCCCTCATCCCAAACGACTTTGGTATGTTCACAG
TCAGGCTCATGAATTTTTACTTATATAAATTTCTTCCAATTGGAACTTTC
AATAACTTGTTATCTTCTTGTAGTNAAGTAACTTTTTAACACCCCCTCAT
CCCAAACGACTTTGGTATGTTCACAGTCAGGCTCATGAATTTTTACTTAT
ATAAATTTCTTCCAATTGGAACTTTCAATAACTTGTTATCTTCTTGTAGT
ATCTAGTAGTCTTATTTATAACTTGCTTTCAACCAATACGTAACGTAACA
CATTTATTTATATTCACTTTCAGTTTCAATCAGCGCCAGCCTTGCTTCAG
ATTCAAACCATCGAAACTTTGCAAAGCATGTTGGGAAATGTGACGTCAGT
ATTACAAAGCTTAACCTCCGTCAAAATGCAAAATTTATACTTAATTAAAA
GTTCACCAAGGTCAGTATGTTTCAAGATAATTTTTCAATCGTTCTCTCCG
TAGTGCAAAGGTAAAGCATTCGGCTTCGATACACAAGGTCGTGGGTTCAA
TCCCAGAGAAGGATCGAGGGTAATTCGAGCAGTCGAGGGAGAAAAAGTAG
TCCCCTCCCTTCAGGTAGCTGAAATCTATCGAAAGAGAAGCCTTCGGGTC
GCTTCCTATTGTGGGCGAAAGATTTACTTCTCTCTTTATCAAACACGAAT
GATCTGCAAGTGGTCAAATTTATTTCTCAGGACCAGCATTGCTCGGATCC
CTCAAAAAGACAAAAACATGTTCTATTATTTGTTTACCCTTTTAGGTATG
TGGACCGTATCTCCGAATCAATGGAACAGAAGCTTCGTGTCTCCGAAAAA
CTACTGAGTCAGATTACGTCACTACGCGAGCGATCACAAGAAGCGGTCAA
AACACAAGCAGATACTGAACCAAAGTTAGCGCTTATCGTGAAAAAGACAA
AAGAACTCCAATCGCAGGTAATTTCAAGAATGATTTTTTTCTAACGCCAT
TTGAATTGCAGTTTTGTGTTGACTACTGACTTCTTGCAACTCTATCGAGT
TTTTGAAATTATGTTACCTCTACAAGTGGTTAGCAGACGATATCATCCAC
CAGGATGCAAGTGAAATTTTTCAATATGCGGACCTAGACGGGGGTTCGGC
TATCAGTTAGGGTTAGGTTATCATTTAGGGTTAGGGTTGGAGCTGGAGAG
TCACAATATAAGGCCGAAGGTCTTCTTAGGGGCATTCGTATCTTGTCACT
TAACTTGAAGGGATCCCTGTATGGGGCATCGGTAGGATTGGGAGCTTACT
CAATTAAAGTCCGTATGGTTTTTTTCCTTTACTTTTCAGGTCGAAAGCGA
GATATCAAGTCGTTATAAAGATCGTAAAGTCAACATCATGGGAGAAATTA
ACACTATTTAGAGTTTT

Coding sequence (CDS) from alignment at sc0004480:1..2867-

>TCONS_00043696 ID=TCONS_00043696|Name=TCONS_00043696|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at sc0004480:1..2867- (Clytia hemisphaerica)
GTCGAAAGCGAGATATCAAGTCGTTATAAAGATCGTAAAGTCAACATCAT
GGGAGAAATTAACACTATTTAGGTATGTGGACCGTATCTCCGAATCAATG
GAACAGAAGCTTCGTGTCTCCGAAAAACTACTGAGTCAGATTACGTCACT
ACGCGAGCGATCACAAGAAGCGGTCAAAACACAAGCAGATACTGAACCAA
AGTTAGCGCTTATCGTGAAAAAGACAAAAGAACTCCAATCGCAGTTTCAA
TCAGCGCCAGCCTTGCTTCAGATTCAAACCATCGAAACTTTGCAAAGCAT
GTTGGGAAATGTGACGTCAGTATTACAAAGCTTAACCTCCGTCAAAATGC
AAAATTTATACTTAATTAAAAGTTCACCAAGATGAGGCTAAACGCTGATA
TGATCACAGTCTATGAGGTCGAAAGCGAGATATCAAGTCGTTATAAAGAT
CGTAAAGTCAACATCATGGGAGAAATTAACACTATTTAGGTATGTGGACC
GTATCTCCGAATCAATGGAACAGAAGCTTCGTGTCTCCGAAAAACTACTG
AGTCAGATTACGTCACTACGCGAGCGATCACAAGAAGCGGTCAAAACACA
AGCAGATACTGAACCAAAGTTAGCGCTTATCGTGAAAAAGACAAAAGAAC
TCCAATCGCAGTTTCAATCAGCGCCAGCCTTGCTTCAGATTCAAACCATC
GAAACTTTGCAAAGCATGTTGGGAAATGTGACGTCAGTATTACAAAGCTT
AACCTCCGTCAAAATGCAAAATTTATACTTAATTAAAAGTTCACCAAGAT
GAGGCTAAACGCTGATATGATCACAGTCTATGAGGTCGAAAGCGAGATAT
CAAGTCGTTATAAAGATCGTAAAGTCAACATCATGGGAGAAATTAACACT
ATTTAGGTATGTGGACCGTATCTCCGAATCAATGGAACAGAAGCTTCGTG
TCTCCGAAAAACTACTGAGTCAGATTACGTCACTACGCGAGCGATCACAA
GAAGCGGTCAAAACACAAGCAGATACTGAACCAAAGTTAGCGCTTATCGT
GAAAAAGACAAAAGAACTCCAATCGCAGTTTCAATCAGCGCCAGCCTTGC
TTCAGATTCAAACCATCGAAACTTTGCAAAGCATGTTGGGAAATGTGACG
TCAGTATTACAAAGCTTAACCTCCGTCAAAATGCAAAATTTATACTTAAT
TAAAAGTTCACCAAGATGAGGCTAAACGCTGATATGATCACAGTCTATGA
GGTCGAAAGCGAGATATCAAGTCGTTATAAAGATCGTAAAGTCAACATCA
TGGGAGAAATTAACACTATTTAGGTATGTGGACCGTATCTCCGAATCAAT
GGAACAGAAGCTTCGTGTCTCCGAAAAACTACTGAGTCAGATTACGTCAC
TACGCGAGCGATCACAAGAAGCGGTCAAAACACAAGCAGATACTGAACCA
AAGTTAGCGCTTATCGTGAAAAAGACAAAAGAACTCCAATCGCAGTTTCA
ATCAGCGCCAGCCTTGCTTCAGATTCAAACCATCGAAACTTTGCAAAGCA
TGTTGGGAAATGTGACGTCAGTATTACAAAGCTTAACCTCCGTCAAAATG
CAAAATTTATACTTAATTAAAAGTTCACCAAGATGAGGCTAAACGCTGAT
ATGATCACAGTCTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027380XLOC_027380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043696-exon-sc0004480-1575043694:1861..2867TCONS_00043696-exon-sc0004480-1575043694:1861..2867Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1575043694:958..1094TCONS_00043696-exon-sc0004480-1575043694:958..1094Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1575043694:451..622TCONS_00043696-exon-sc0004480-1575043694:451..622Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1575043694:1..78TCONS_00043696-exon-sc0004480-1575043694:1..78Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1510915933:1861..2867TCONS_00043696-exon-sc0004480-1510915933:1861..2867Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1510915933:958..1094TCONS_00043696-exon-sc0004480-1510915933:958..1094Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1510915933:451..622TCONS_00043696-exon-sc0004480-1510915933:451..622Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1510915933:1..78TCONS_00043696-exon-sc0004480-1510915933:1..78Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1491911889:1861..2867TCONS_00043696-exon-sc0004480-1491911889:1861..2867Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1491911889:958..1094TCONS_00043696-exon-sc0004480-1491911889:958..1094Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1491911889:451..622TCONS_00043696-exon-sc0004480-1491911889:451..622Clytia hemisphaericaexon
TCONS_00043696-exon-sc0004480-1491911889:1..78TCONS_00043696-exon-sc0004480-1491911889:1..78Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043696-proteinTCONS_00043696-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004480supercontigsc0004480:1..2867 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.586	22.0132	9.0509	7.8268	31.1287	25.364	32.6022	32.5037	22.5548	20.6252	16.6827	16.7091	12.1261	11.8693	13.3283	13.2999	19.8905	16.9086	8.4975	10.1576	13.026	13.1732	16.4772	15.3235	17.7115	16.2947	10.7557	6.4842	13.7904	12.4929
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008491DUF773
Blast
[Close]
BLAST of TCONS_00043696 vs. Swiss-Prot (Human)
Match: CK5P3 (CDK5 regulatory subunit-associated protein 3 OS=Homo sapiens GN=CDK5RAP3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.673e-29
Identity = 62/138 (44.93%), Postives = 100/138 (72.46%), Query Frame = 3 
Query:  957 QRLSEMRLNADMITVYEFQSAPALLQIQTIETLQSMLGNVTSVLQSLTSVKMQNLYLIKSSPRYVDRISESMEQKLRVSEKLLSQITSLRERSQEAVKTQADTEPKLALIVKKTKELQSQVESEISSRYKDRKVNIMG 1370
            QR  E+   AD+++V +FQ APA+LQ QT E + +M+  +  ++  LTS+++Q+L++I +SPRYVDR++E ++QKL+ S+ L  +   + ++ QEA++ QA  EPKL L+++KTKELQ  +E++IS RY  R VN+MG
Sbjct:  366 QRAVELSEEADVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMG 503
The following BLAST results are available for this feature:
BLAST of TCONS_00043696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CK5P32.673e-2944.93CDK5 regulatory subunit-associated protein 3 OS=Ho... [more]
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