TCONS_00043689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043689
Unique NameTCONS_00043689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043689 ID=TCONS_00043689|Name=TCONS_00043689|organism=Clytia hemisphaerica|type=transcript|length=641bp
TGACCGTCGATATAAGGGGAAAATTACGAAATTTTGTGCTGTACACCTTT
AGCCAAgtctaaaaaatactttgagagGTCCCTATTGAGCTCTGGACCAA
GTCAAGCTAGCGAAGGAGTGACATCCCTGAGAAGGTAAATTGGTGCACGG
CTTGAAGTtggcccagtggtctaaggcgtTAGGTTCACGCACTAGCAATC
CCCAGTTCGAATCGGGCTAGGGGCACCTTTAAAATCTTTATTCAGGTTTT
GATAActcatgtttttttgggtgtagatttcgaaaaaataggTCCAAAGT
CCTCAAAAGTTGACGGAAGGGCGCTACGGGTCCCGTAAAAAGACCCGTAC
ATGATCGTTAATGACTCCctcccctagcgccggactgggtggatttaacg
acttgaaactttctggagacgtcaagcatatcAAAGGGGGAAAGCATCcc
aaatttcatcactccaCCGTTACCGGTCACCAggctacgggccgcgaaag
gtacgctgcAAGACGTCCctgtaaggacgattgccggtccgtacggcgtt
tttagccagtcaaactttccgtgaggcatctctacagaatggagaacaag
cctgcaaaatatctacGACGTAGCACCAAAATTGAAGAaac
Run BLAST on NCBI

transcript from alignment at sc0004471:3476..4116

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043689 ID=TCONS_00043689|Name=TCONS_00043689|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0004471:3476..4116 (Clytia hemisphaerica)
gttTCTTCAATTTTGGTGCTACGTCgtagatattttgcaggcttgttctc
cattctgtagagatgcctcacggaaagtttgactggctaaaaacgccgta
cggaccggcaatcgtccttacagGGACGTCTTgcagcgtacctttcgcgg
cccgtagccTGGTGACCGGTAACGGtggagtgatgaaatttggGATGCTT
TCCCCCTTTgatatgcttgacgtctccagaaagtttcaagtcgttaaatc
cacccagtccggcgctaggggagGGAGTCATTAACGATCATGTACGGGTC
TTTTTACGGGACCCGTAGCGCCCTTCCGTCAACTTTTGAGGACTTTGGAc
ctattttttcgaaatctacacccaaaaaaacatgagTTATCAAAACCTGA
ATAAAGATTTTAAAGGTGCCCCTAGCCCGATTCGAACTGGGGATTGCTAG
TGCGTGAACCTAacgccttagaccactgggccaACTTCAAGCCGTGCACC
AATTTACCTTCTCAGGGATGTCACTCCTTCGCTAGCTTGACTTGGTCCAG
AGCTCAATAGGGACctctcaaagtattttttagacTTGGCTAAAGGTGTA
CAGCACAAAATTTCGTAATTTTCCCCTTATATCGACGGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027373XLOC_027373Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043689-exon-sc0004471-1491911889:3476..4116TCONS_00043689-exon-sc0004471-1491911889:3476..4116Clytia hemisphaericaexon
TCONS_00043689-exon-sc0004471-1510915933:3476..4116TCONS_00043689-exon-sc0004471-1510915933:3476..4116Clytia hemisphaericaexon
TCONS_00043689-exon-sc0004471-1575043694:3476..4116TCONS_00043689-exon-sc0004471-1575043694:3476..4116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004471supercontigsc0004471:3476..4116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.330872	0.161167	0.377633	0	0.553747	0.262547	0	0.395385	0.276819	0.257163	0.170972	0.382861	0.330147	0.226887	0.279798	0.150133	0.43452	0.12638	0.0873001	0.182706	0.476415	0	0.282487	0.342429	0.79356	0.472156	0	0.240358	0.0911517	0.278607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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