TCONS_00043682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043682
Unique NameTCONS_00043682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043682 ID=TCONS_00043682|Name=TCONS_00043682|organism=Clytia hemisphaerica|type=transcript|length=295bp
GTTAAGACATGGTGGCCAGGAATGGGTCCTGATGTTGAAGAATTTATCAA
ATCATGCCATGGATGCCAAGTAGTTTGACCGCTACCCAAACCAACTCAGC
TGGCAACAACAAAAATTCCAGATGAATCGTGGTTACTGCTCAGATGTGAT
CTTGTTGGACCGTTCCCAACAGGTGAAGACCTTCTCGTTTGTGTAGATTA
TTATTCAAAATACCCAGAAGTGGAATTACTTCACAACGTTTCGTCAAAGT
CCATTGCTACgaaattaagaaaattgttTTGTAGATATGGTGCAC
Run BLAST on NCBI

transcript from alignment at sc0004467:45..339

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043682 ID=TCONS_00043682|Name=TCONS_00043682|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0004467:45..339 (Clytia hemisphaerica)
GTGCACCATATCTACAAaacaattttcttaatttcGTAGCAATGGACTTT
GACGAAACGTTGTGAAGTAATTCCACTTCTGGGTATTTTGAATAATAATC
TACACAAACGAGAAGGTCTTCACCTGTTGGGAACGGTCCAACAAGATCAC
ATCTGAGCAGTAACCACGATTCATCTGGAATTTTTGTTGTTGCCAGCTGA
GTTGGTTTGGGTAGCGGTCAAACTACTTGGCATCCATGGCATGATTTGAT
AAATTCTTCAACATCAGGACCCATTCCTGGCCACCATGTCTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027366XLOC_027366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043682-exon-sc0004467-1491911889:45..339TCONS_00043682-exon-sc0004467-1491911889:45..339Clytia hemisphaericaexon
TCONS_00043682-exon-sc0004467-1510915933:45..339TCONS_00043682-exon-sc0004467-1510915933:45..339Clytia hemisphaericaexon
TCONS_00043682-exon-sc0004467-1575043694:45..339TCONS_00043682-exon-sc0004467-1575043694:45..339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004467supercontigsc0004467:45..339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41339	1.36666	0.465971	1.36764	0	0	0	0.644265	0.798558	1.42541	0.452809	0.389156	0.721407	0	0	0.250783	0.719396	0	0.501417	1.61413	3.12165	3.49153	1.23572	2.03207	0	0	2.13747	3.33876	0.594496	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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