TCONS_00043642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043642
Unique NameTCONS_00043642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length936

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043642 ID=TCONS_00043642|Name=TCONS_00043642|organism=Clytia hemisphaerica|type=transcript|length=936bp
CACTAGTTGACTATGATATGGCAACTTTGTTACCGTCACAAATCGCTGCA
GCTGCCAGCTACTTATCCACACAATTACTGGACAAAGAGAAGGCTGAATG
GACTCCAACGTTAGCACACTATAGCACTTATTCAGAAGCAGCCATCTTCC
CAATCGTTTGTCAAATGGCTAAGCTTGTGTTGACCATGAACATGGAAGGT
TCGAAATATCAAGCAGTCAAAAGTAAATACGCTGAAAGCAAATTCATGAA
AATTAGCCGATACCCTGTACTGGTTGGACCTTACATGCGCGAATTGGCAG
ACCAAGTCGACAATGCTTGAACCTTAAGAAGATACTGGGATGGATTTTAA
ATGGGCTTTTTTATTAATGGAAATTGCTTTAACAGATCTCAGCAGATCTT
AAGTTTTATTTTGAGAAGAGGGGTAAGTATTTCACTCCAGGGAAGTAGTA
GGCACTTAAACATAACTCTAAACGTCGAACTTAGTCTCTATGATACTTTG
TTGTATATTTTGTACATACAATATGGATCCGATAATTGACAATTACTGAA
CTCAAACATTAAATCGTTCTTGCTAAATAAATACGGCCCATTTTCACCTT
TCTGTTGACCTGGCTGCATTTGGTATTACTTAGTATTTAACAAAAATGTA
AATATGATATAAAAGTTCAGGTAGTATTTTTTATCCGTATGATGAACACC
TTTTGTAAATAGATTCTtttgaaaacatattttattgaaagaaaaaataa
cacaaattaaaatttgataatattCAGCATTTGCTTAATTTAGTCCATGT
TTCACAGAATGTAGTTGCCCCCACAGGGAAGCAGTTAACGTCCACACTTC
AGACAggcaatttcaaaattcattgccgtagagaaAAAGTTGTTTGTTTT
GGAGAGTAGAGTTAGTCTGATTTTAGTCGCTCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00043642-protein

>TCONS_00043642-protein ID=TCONS_00043642-protein|Name=TCONS_00043642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
LVDYDMATLLPSQIAAAASYLSTQLLDKEKAEWTPTLAHYSTYSEAAIFP
IVCQMAKLVLTMNMEGSKYQAVKSKYAESKFMKISRYPVLVGPYMRELAD
QVDNA
Run BLAST on NCBI

transcript from alignment at sc0004426:1..1102+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043642 ID=TCONS_00043642|Name=TCONS_00043642|organism=Clytia hemisphaerica|type=transcript|length=1102bp|location=Sequence derived from alignment at sc0004426:1..1102+ (Clytia hemisphaerica)
CACTAGTTGACTATGATATGGCAACTTTGTTACCGTCACAAATCGCTGCA
GCTGCCAGCTACTTATCCACACAATTACTGGACAAAGAGAAGGCTGAATG
GGTAAGACTTTCCTTTTCCATTTTAGAGCAGCGTTTCTTGTTTTTCCCAC
AGGGGCAAACCTGGAAACCAAACTGCTAAAGGTCCAAGGTCTAAGTCGGG
CATAAATTGATTTTCACAATAGTCGATTATTTCAATGTGATATtacaaat
ctttattttctttacagACTCCAACGTTAGCACACTATAGCACTTATTCA
GAAGCAGCCATCTTCCCAATCGTTTGTCAAATGGCTAAGCTTGTGTTGAC
CATGAACATGGAAGGTTCGAAATATCAAGCAGTCAAAAGTAAATACGCTG
AAAGCAAATTCATGAAAATTAGCCGATACCCTGTACTGGTTGGACCTTAC
ATGCGCGAATTGGCAGACCAAGTCGACAATGCTTGAACCTTAAGAAGATA
CTGGGATGGATTTTAAATGGGCTTTTTTATTAATGGAAATTGCTTTAACA
GATCTCAGCAGATCTTAAGTTTTATTTTGAGAAGAGGGGTAAGTATTTCA
CTCCAGGGAAGTAGTAGGCACTTAAACATAACTCTAAACGTCGAACTTAG
TCTCTATGATACTTTGTTGTATATTTTGTACATACAATATGGATCCGATA
ATTGACAATTACTGAACTCAAACATTAAATCGTTCTTGCTAAATAAATAC
GGCCCATTTTCACCTTTCTGTTGACCTGGCTGCATTTGGTATTACTTAGT
ATTTAACAAAAATGTAAATATGATATAAAAGTTCAGGTAGTATTTTTTAT
CCGTATGATGAACACCTTTTGTAAATAGATTCTtttgaaaacatatttta
ttgaaagaaaaaataacacaaattaaaatttgataatattCAGCATTTGC
TTAATTTAGTCCATGTTTCACAGAATGTAGTTGCCCCCACAGGGAAGCAG
TTAACGTCCACACTTCAGACAggcaatttcaaaattcattgccgtagaga
aAAAGTTGTTTGTTTTGGAGAGTAGAGTTAGTCTGATTTTAGTCGCTCTT
TG

Coding sequence (CDS) from alignment at sc0004426:1..1102+

>TCONS_00043642 ID=TCONS_00043642|Name=TCONS_00043642|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0004426:1..1102+ (Clytia hemisphaerica)
CTAGTTGACTATGATATGGCAACTTTGTTACCGTCACAAATCGCTGCAGC
TGCCAGCTACTTATCCACACAATTACTGGACAAAGAGAAGGCTGAATGGA
CTCCAACGTTAGCACACTATAGCACTTATTCAGAAGCAGCCATCTTCCCA
ATCGTTTGTCAAATGGCTAAGCTTGTGTTGACCATGAACATGGAAGGTTC
GAAATATCAAGCAGTCAAAAGTAAATACGCTGAAAGCAAATTCATGAAAA
TTAGCCGATACCCTGTACTGGTTGGACCTTACATGCGCGAATTGGCAGAC
CAAGTCGACAATGCTTGACTAGTTGACTATGATATGGCAACTTTGTTACC
GTCACAAATCGCTGCAGCTGCCAGCTACTTATCCACACAATTACTGGACA
AAGAGAAGGCTGAATGGACTCCAACGTTAGCACACTATAGCACTTATTCA
GAAGCAGCCATCTTCCCAATCGTTTGTCAAATGGCTAAGCTTGTGTTGAC
CATGAACATGGAAGGTTCGAAATATCAAGCAGTCAAAAGTAAATACGCTG
AAAGCAAATTCATGAAAATTAGCCGATACCCTGTACTGGTTGGACCTTAC
ATGCGCGAATTGGCAGACCAAGTCGACAATGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027326XLOC_027326Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043642-proteinTCONS_00043642-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043642-exon-sc0004426-1491911889:1..101TCONS_00043642-exon-sc0004426-1491911889:1..101Clytia hemisphaericaexon
TCONS_00043642-exon-sc0004426-1510915933:1..101TCONS_00043642-exon-sc0004426-1510915933:1..101Clytia hemisphaericaexon
TCONS_00043642-exon-sc0004426-1575043694:1..101TCONS_00043642-exon-sc0004426-1575043694:1..101Clytia hemisphaericaexon
TCONS_00043642-exon-sc0004426-1491911889:268..1102TCONS_00043642-exon-sc0004426-1491911889:268..1102Clytia hemisphaericaexon
TCONS_00043642-exon-sc0004426-1510915933:268..1102TCONS_00043642-exon-sc0004426-1510915933:268..1102Clytia hemisphaericaexon
TCONS_00043642-exon-sc0004426-1575043694:268..1102TCONS_00043642-exon-sc0004426-1575043694:268..1102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004426supercontigsc0004426:1..1102 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.7823	33.5809	66.0669	88.289	50.3685	42.2444	20.1211	19.7594	16.3675	16.5156	9.95548	11.9	6.03713	4.84743	11.1204	13.6355	28.9321	19.7145	1.72089	1.86234	10.3327	11.2465	131.49	104.362	28.2484	20.8351	8.26378	11.6892	94.4991	108.122
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004367Cyclin_C-dom
IPR013763Cyclin-like
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
Blast
[Close]
BLAST of TCONS_00043642 vs. Swiss-Prot (Human)
Match: CCNB1 (G2/mitotic-specific cyclin-B1 OS=Homo sapiens GN=CCNB1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.337e-18
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:    3 LVDYDMATLLPSQIAAAASYLSTQLLDKEKAEWTPTLAHYSTYSEAAIFPIVCQMAKLVLTMNMEGSKYQAVKSKYAESKFMKISRYPVLVGPYMRELADQV 308
            ++DYDM    PSQIAA A  L+ ++LD    EWTPTL HY +Y+E ++ P++  +AK V+ +N   +K+  VK+KYA SK  KIS  P L    +++LA  V
Sbjct:  331 MLDYDMVHFPPSQIAAGAFCLALKILDN--GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLNSALVQDLAKAV 430
The following BLAST results are available for this feature:
BLAST of TCONS_00043642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNB11.337e-1844.12G2/mitotic-specific cyclin-B1 OS=Homo sapiens GN=C... [more]
back to top