TCONS_00043642-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043642-protein
Unique NameTCONS_00043642-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length105

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043642-protein ID=TCONS_00043642-protein|Name=TCONS_00043642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
LVDYDMATLLPSQIAAAASYLSTQLLDKEKAEWTPTLAHYSTYSEAAIFP
IVCQMAKLVLTMNMEGSKYQAVKSKYAESKFMKISRYPVLVGPYMRELAD
QVDNA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027326XLOC_027326Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043642TCONS_00043642Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004367Cyclin_C-dom
IPR013763Cyclin-like
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004367Cyclin, C-terminal domainSMARTSM01332Cyclin_C_2coord: 1..90
e-value: 4.4E-6
score: 36.2
IPR004367Cyclin, C-terminal domainPFAMPF02984Cyclin_Ccoord: 1..88
e-value: 6.8E-22
score: 77.7
IPR013763Cyclin-likeGENE3D1.10.472.10coord: 1..105
e-value: 5.2E-20
score: 71.4
IPR013763Cyclin-likeSUPERFAMILY47954Cyclin-likecoord: 1..89
NoneNo IPR availableCDDcd00043CYCLINcoord: 1..60
e-value: 1.19579E-4
score: 35.2921

Blast
[Close]
BLAST of TCONS_00043642-protein vs. Swiss-Prot (Human)
Match: CCNB1 (G2/mitotic-specific cyclin-B1 OS=Homo sapiens GN=CCNB1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.645e-21
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 0 
Query:    1 LVDYDMATLLPSQIAAAASYLSTQLLDKEKAEWTPTLAHYSTYSEAAIFPIVCQMAKLVLTMNMEGSKYQAVKSKYAESKFMKISRYPVLVGPYMRELADQV 102
            ++DYDM    PSQIAA A  L+ ++LD    EWTPTL HY +Y+E ++ P++  +AK V+ +N   +K+  VK+KYA SK  KIS  P L    +++LA  V
Sbjct:  331 MLDYDMVHFPPSQIAAGAFCLALKILDN--GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLNSALVQDLAKAV 430
The following BLAST results are available for this feature:
BLAST of TCONS_00043642-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNB15.645e-2144.12G2/mitotic-specific cyclin-B1 OS=Homo sapiens GN=C... [more]
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