TCONS_00043641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043641
Unique NameTCONS_00043641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043641 ID=TCONS_00043641|Name=TCONS_00043641|organism=Clytia hemisphaerica|type=transcript|length=574bp
AGGAGCTAGACTCAAGACAAAACTCAGTTATATGCAGTACTGGTTATATG
GTTTGAAAGTCATAAGTAAGTATCGGAGAAAAGTTATCATTTACATATCT
ATTTTCGAgctcttttaaacaaaaaactgaaGAAACTTCTCCGATTAAAT
TATTGGACGCTCTTTCTGgttgaatttttctttagaaatttgtAAGCCAA
ATCTGCCAAACCTGATTGGCTCTTACGGTAAACTCGAAAATTTATTGGCC
CGCCCGCCGAAATAAATAGCCAACACTCATATTACAATAGACCAATATTT
CCCGGTCTTCCAGTTCACTCTTTCATTTCCCTGcttttatttgtgtttat
ttttacattttctcacATTGAGTTGCTTCTTTCCTTTTGGACATGTTCAT
TAAAAACGTCAAGTTTTGTGACACcttaaaaaatggtaaaaatcactttt
ttgttGACAAGTCATGATTTTGTGGGATCCAAGTAATGAAATTTTGTGGA
TAATTCCGTAACAATGTCTCTTAAAAGCTTGAATGGTCAAAATATTGAGG
TTTTCATTATATTACAAGATCTGG
Run BLAST on NCBI

transcript from alignment at sc0004425:3588..4161

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043641 ID=TCONS_00043641|Name=TCONS_00043641|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0004425:3588..4161 (Clytia hemisphaerica)
CCAGATCTTGTAATATAATGAAAACCTCAATATTTTGACCATTCAAGCTT
TTAAGAGACATTGTTACGGAATTATCCACAAAATTTCATTACTTGGATCC
CACAAAATCATGACTTGTCaacaaaaaagtgatttttaccattttttaag
GTGTCACAAAACTTGACGTTTTTAATGAACATGTCCAAAAGGAAAGAAGC
AACTCAATgtgagaaaatgtaaaaataaacacaaataaaagCAGGGAAAT
GAAAGAGTGAACTGGAAGACCGGGAAATATTGGTCTATTGTAATATGAGT
GTTGGCTATTTATTTCGGCGGGCGGGCCAATAAATTTTCGAGTTTACCGT
AAGAGCCAATCAGGTTTGGCAGATTTGGCTTacaaatttctaaagaaaaa
ttcaacCAGAAAGAGCGTCCAATAATTTAATCGGAGAAGTTTCttcagtt
ttttgtttaaaagagcTCGAAAATAGATATGTAAATGATAACTTTTCTCC
GATACTTACTTATGACTTTCAAACCATATAACCAGTACTGCATATAACTG
AGTTTTGTCTTGAGTCTAGCTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027325XLOC_027325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043641-exon-sc0004425-1491911889:3588..4161TCONS_00043641-exon-sc0004425-1491911889:3588..4161Clytia hemisphaericaexon
TCONS_00043641-exon-sc0004425-1510915933:3588..4161TCONS_00043641-exon-sc0004425-1510915933:3588..4161Clytia hemisphaericaexon
TCONS_00043641-exon-sc0004425-1575043694:3588..4161TCONS_00043641-exon-sc0004425-1575043694:3588..4161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004425supercontigsc0004425:3588..4161 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194399	0.284354	0.660324	0.430683	0.786472	0.517901	0.49986	0.584954	0.081908	0.101456	0.689331	0.129468	0.258577	0.402802	1.26944	1.06615	0.656704	0.373945	0.20665	0.9731	0.469889	0.962621	0.111447	0.101321	0.521793	1.02451	0	0.14224	0.107884	0.219833
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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