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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043631 ID=TCONS_00043631|Name=TCONS_00043631|organism=Clytia hemisphaerica|type=transcript|length=707bp
AGATACGATTCATTCATTGATCCGAGTGGGTTAACGCAGCGTTCACATTA
CTTCACTCATTACTCTAACCCTGGTGGTATTTTACATTACCTAGTGCGTG
TGGAGCCATTCACTAGTTTACACATCCGTTTACAAGGCGGAAAATTCGAC
TGTGCTGATCGACAGTTCTACTCAATAGCTACAACGTGGAAAACTGTTTA
TACTGGAGGCGACGTCAAGGAGTTGATCCCAGAATTCTTCTGCTTCCCAG
AATTCCTTTCAAACCTGAACCATTTCAATTTAGGCTCTAGACagAGGACT
GGGGAGAGGGTGAACGATGTCGCCCTTCCGCCCTGGGCGAAAAACGCGTA
CGATTTTATCGACATCCATCGAAGAGCTCTCGAGTCTGAATATGTTTCAG
AGAATCTTCACTCGTGGATCGACTTAATCTTCGGATACAAGCAACGTGGA
AAAAATGCTGAGCAAGCATTAAATGTCTTCAGCCATTATTCATATGAAGG
TGCTGTCGATCTCGATAAAATCGAGGACGATATTTTGCGTGAAGCCACGG
AAGGGATGATCAACAACTTTGGACAAACGCCAACGCAATTATTGAAGAAA
CCGCATCCTAAACGAAAGGCGTTGAGTGAGGTGGACCTCGGGCGGATGAA
AGTGACCACTCAATTAGAAACAGATCCCAATAACATCAACTTCTCGCTCA
TTCAGGT Run BLAST on NCBI protein sequence of TCONS_00043631-protein >TCONS_00043631-protein ID=TCONS_00043631-protein|Name=TCONS_00043631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
RYDSFIDPSGLTQRSHYFTHYSNPGGILHYLVRVEPFTSLHIRLQGGKFD
CADRQFYSIATTWKTVYTGGDVKELIPEFFCFPEFLSNLNHFNLGSRQRT
GERVNDVALPPWAKNAYDFIDIHRRALESEYVSENLHSWIDLIFGYKQRG
KNAEQALNVFSHYSYEGAVDLDKIEDDILREATEGMINNFGQTPTQLLKK
PHPKRKALSEVDLGRMKVTTQLETDPNNINFSLIQ Run BLAST on NCBI transcript from alignment at sc0004414:5457..6810+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043631 ID=TCONS_00043631|Name=TCONS_00043631|organism=Clytia hemisphaerica|type=transcript|length=1354bp|location=Sequence derived from alignment at sc0004414:5457..6810+ (Clytia hemisphaerica)
AGATACGATTCATTCATTGATCCGAGTGGGTTAACGCAGCGTTCACATTA
CTTCACTCATTACTCTAACCCTGGTGGTATTTTACATTACCTAGTGCGTG
TGGAGCCATTCACTAGTTTACACATCCGTTTACAAGGCGGAAAATTCGAC
TGTGCTGATCGACAGTTCTACTCAATAGCTACAACGTGGAAAACTGTTTA
TACTGGAGGCGACGTCAAGGAGTTGATCCCAGAATTCTTCTGCTTCCCAG
AATTCCTTTCAAACCTGAACCATTTCAATTTAGGCTCTAGACaggtaaat
taaatttatttgTAATCAAAAGTTTGACAAATCATTTTACTTACACCCAT
ATTGTTCAATCCTTACCGTGAAAGGTAGTCGGGGCAGTTTTGGTCGAGGG
AAATATAACAATCAGTCTATAAGGTTACAAAATTACCCTCGATCTTTTTC
TCCAATAAGtttaatgaaatttcacttCACATCCTGTGTTTGTATTTCTG
CCTCTGAAATAGTTTTTATCATTCCCCTCTCATGGTTGATATTGCTCTAC
AGCGGACTAGGGGACTGTTACTAATTTGAACTTCTATAAATTCGAAACCC
TCTGTAATTTGAACAAACTAGGtttcccgttcgagttcgaattagcaaga
GTCTTCTGTTCAAGAGAGATCGTTGTGTCATGCTGAACTTTACATTTCAT
TTCATAGAGGACTGGGGAGAGGGTGAACGATGTCGCCCTTCCGCCCTGGG
CGAAAAACGCGTACGATTTTATCGACATCCATCGAAGAGCTCTCGAGTCT
GAATATGTTTCAGAGAATCTTCACTCGTGGATCGACTTAATCTTCGGATA
CAAGCAACGTGGAAAAAATGCTGAGCAAGCATTAAATGTCTTCAGCCATT
ATTCATATGAAGGtaaaactttgttgtttttcattcaatgTTTCAACTCA
TTCAATTCATTCCGATAACTTTCTCTTTGTTATCTTGTTGAAGAAGACCT
TAGGCCGAAAAATTCATAAAGACACTTCTCGCTTTTTTATACTTCAATAT
TGAGGATGTTTAACTGTTACTTCAATTCACGCTACAATACTGAAGAGTTT
GCGCAGAGTAATCTTGAGATAACTTTTTACATTCACTTCCCCTCAGGTGC
TGTCGATCTCGATAAAATCGAGGACGATATTTTGCGTGAAGCCACGGAAG
GGATGATCAACAACTTTGGACAAACGCCAACGCAATTATTGAAGAAACCG
CATCCTAAACGAAAGGCGTTGAGTGAGGTGGACCTCGGGCGGATGAAAGT
GACCACTCAATTAGAAACAGATCCCAATAACATCAACTTCTCGCTCATTC
AGGT Coding sequence (CDS) from alignment at sc0004414:5457..6810+ >TCONS_00043631 ID=TCONS_00043631|Name=TCONS_00043631|organism=Clytia hemisphaerica|type=CDS|length=2115bp|location=Sequence derived from alignment at sc0004414:5457..6810+ (Clytia hemisphaerica)
AGATACGATTCATTCATTGATCCGAGTGGGTTAACGCAGCGTTCACATTA
CTTCACTCATTACTCTAACCCTGGTGGTATTTTACATTACCTAGTGCGTG
TGGAGCCATTCACTAGTTTACACATCCGTTTACAAGGCGGAAAATTCGAC
TGTGCTGATCGACAGTTCTACTCAATAGCTACAACGTGGAAAACTGTTTA
TACTGGAGGCGACGTCAAGGAGTTGATCCCAGAATTCTTCTGCTTCCCAG
AATTCCTTTCAAACCTGAACCATTTCAATTTAGGCTCTAGACagAGGACT
GGGGAGAGGGTGAACGATGTCGCCCTTCCGCCCTGGGCGAAAAACGCGTA
CGATTTTATCGACATCCATCGAAGAGCTCTCGAGTCTGAATATGTTTCAG
AGAATCTTCACTCGTGGATCGACTTAATCTTCGGATACAAGCAACGTGGA
AAAAATGCTGAGCAAGCATTAAATGTCTTCAGCCATTATTCATATGAAGG
TGCTGTCGATCTCGATAAAATCGAGGACGATATTTTGCGTGAAGCCACGG
AAGGGATGATCAACAACTTTGGACAAACGCCAACGCAATTATTGAAGAAA
CCGCATCCTAAACGAAAGGCGTTGAGTGAGGTGGACCTCGGGCGGATGAA
AGTGACCACTCAATTAGAAACAGATCCCAATAACATCAACTTCTCGCTCA
TTCAGAGATACGATTCATTCATTGATCCGAGTGGGTTAACGCAGCGTTCA
CATTACTTCACTCATTACTCTAACCCTGGTGGTATTTTACATTACCTAGT
GCGTGTGGAGCCATTCACTAGTTTACACATCCGTTTACAAGGCGGAAAAT
TCGACTGTGCTGATCGACAGTTCTACTCAATAGCTACAACGTGGAAAACT
GTTTATACTGGAGGCGACGTCAAGGAGTTGATCCCAGAATTCTTCTGCTT
CCCAGAATTCCTTTCAAACCTGAACCATTTCAATTTAGGCTCTAGACagA
GGACTGGGGAGAGGGTGAACGATGTCGCCCTTCCGCCCTGGGCGAAAAAC
GCGTACGATTTTATCGACATCCATCGAAGAGCTCTCGAGTCTGAATATGT
TTCAGAGAATCTTCACTCGTGGATCGACTTAATCTTCGGATACAAGCAAC
GTGGAAAAAATGCTGAGCAAGCATTAAATGTCTTCAGCCATTATTCATAT
GAAGGTGCTGTCGATCTCGATAAAATCGAGGACGATATTTTGCGTGAAGC
CACGGAAGGGATGATCAACAACTTTGGACAAACGCCAACGCAATTATTGA
AGAAACCGCATCCTAAACGAAAGGCGTTGAGTGAGGTGGACCTCGGGCGG
ATGAAAGTGACCACTCAATTAGAAACAGATCCCAATAACATCAACTTCTC
GCTCATTCAGAGATACGATTCATTCATTGATCCGAGTGGGTTAACGCAGC
GTTCACATTACTTCACTCATTACTCTAACCCTGGTGGTATTTTACATTAC
CTAGTGCGTGTGGAGCCATTCACTAGTTTACACATCCGTTTACAAGGCGG
AAAATTCGACTGTGCTGATCGACAGTTCTACTCAATAGCTACAACGTGGA
AAACTGTTTATACTGGAGGCGACGTCAAGGAGTTGATCCCAGAATTCTTC
TGCTTCCCAGAATTCCTTTCAAACCTGAACCATTTCAATTTAGGCTCTAG
ACagAGGACTGGGGAGAGGGTGAACGATGTCGCCCTTCCGCCCTGGGCGA
AAAACGCGTACGATTTTATCGACATCCATCGAAGAGCTCTCGAGTCTGAA
TATGTTTCAGAGAATCTTCACTCGTGGATCGACTTAATCTTCGGATACAA
GCAACGTGGAAAAAATGCTGAGCAAGCATTAAATGTCTTCAGCCATTATT
CATATGAAGGTGCTGTCGATCTCGATAAAATCGAGGACGATATTTTGCGT
GAAGCCACGGAAGGGATGATCAACAACTTTGGACAAACGCCAACGCAATT
ATTGAAGAAACCGCATCCTAAACGAAAGGCGTTGAGTGAGGTGGACCTCG
GGCGGATGAAAGTGACCACTCAATTAGAAACAGATCCCAATAACATCAAC
TTCTCGCTCATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043631-exon-sc0004414-1491911889:5457..5750 | TCONS_00043631-exon-sc0004414-1491911889:5457..5750 | Clytia hemisphaerica | exon |
| TCONS_00043631-exon-sc0004414-1510915933:5457..5750 | TCONS_00043631-exon-sc0004414-1510915933:5457..5750 | Clytia hemisphaerica | exon |
| TCONS_00043631-exon-sc0004414-1575043694:5457..5750 | TCONS_00043631-exon-sc0004414-1575043694:5457..5750 | Clytia hemisphaerica | exon |
| TCONS_00043631-exon-sc0004414-1491911889:6164..6368 | TCONS_00043631-exon-sc0004414-1491911889:6164..6368 | Clytia hemisphaerica | exon |
| TCONS_00043631-exon-sc0004414-1510915933:6164..6368 | TCONS_00043631-exon-sc0004414-1510915933:6164..6368 | Clytia hemisphaerica | exon |
| TCONS_00043631-exon-sc0004414-1575043694:6164..6368 | TCONS_00043631-exon-sc0004414-1575043694:6164..6368 | Clytia hemisphaerica | exon |
| TCONS_00043631-exon-sc0004414-1491911889:6603..6810 | TCONS_00043631-exon-sc0004414-1491911889:6603..6810 | Clytia hemisphaerica | exon |
| TCONS_00043631-exon-sc0004414-1510915933:6603..6810 | TCONS_00043631-exon-sc0004414-1510915933:6603..6810 | Clytia hemisphaerica | exon |
| TCONS_00043631-exon-sc0004414-1575043694:6603..6810 | TCONS_00043631-exon-sc0004414-1575043694:6603..6810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004414 | supercontig | sc0004414:5457..6810 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000409 | BEACH_dom |
Blast
BLAST of TCONS_00043631 vs. Swiss-Prot (Human)
Match: NBEL2 (Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2) HSP 1 Score: 295.819 bits (756), Expect = 9.009e-91 Identity = 132/211 (62.56%), Postives = 164/211 (77.73%), Query Frame = 1
Query: 1 RYDSFIDPSGLTQRSHYFTHYSNPGGILHYLVRVEPFTSLHIRLQGGKFDCADRQFYSIATTWKT-VYTGGDVKELIPEFFCFPEFLSNLNHFNLGSRQRTGERVNDVALPPWAKNAYDFIDIHRRALESEYVSENLHSWIDLIFGYKQRGKNAEQALNVFSHYSYEGAVDLDKIEDDILREATEGMINNFGQTPTQLLKKPHPKRKALSE 630
+Y+SF DP+G + HY THYSN G++HYL+RVEPFTSLH++LQ G+FDC+DRQF+S+A W+ + + DVKELIPEFF FP+FL N N F+LG Q T E+V DV LPPWA + DFI HR+ALESEYVS +LH WIDLIFGYKQRG AE+ALNVF + +YEGAVDLD + D+ R+A EG+I+NFGQTP QLLK+PHP R + E
Sbjct: 2140 KYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTRLSAEE 2350
The following BLAST results are available for this feature:
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