TCONS_00043628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043628
Unique NameTCONS_00043628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043628 ID=TCONS_00043628|Name=TCONS_00043628|organism=Clytia hemisphaerica|type=transcript|length=386bp
AtggaatctttttgaaaacatttctaGATACAGTTATATATACTCTATCC
AATTCGATCATTCAGGGATAAAGAAATTtctttcgaattagagaaagatt
cgagttACGTAGAGTATTTTTAAGTATTCTACTTGTAGAGATTCGAATAA
GAGAGGGCTGACTGTTCATGCTTTTCTTACGATAAGAACATTTCGCGAGa
acaattttttcagaaatatatGAATTTAAGAAGAAGCCTTACTTAGATTT
CAGAAATGGGAATTAAGTCATTGAGTAAGCATATTATAAAGAATTATATG
AACAGCTTTAAGTCTAAAATTACGAAGAAGACCAGCCAAGCATCCAGCAT
ATTGTTTTGAACCTTATAAAAAGGCATGTAACTATT
Run BLAST on NCBI

transcript from alignment at sc0004409:6707..7092

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043628 ID=TCONS_00043628|Name=TCONS_00043628|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0004409:6707..7092 (Clytia hemisphaerica)
AATAGTTACATGCCTTTTTATAAGGTTCAAAACAATATGCTGGATGCTTG
GCTGGTCTTCTTCGTAATTTTAGACTTAAAGCTGTTCATATAATTCTTTA
TAATATGCTTACTCAATGACTTAATTCCCATTTCTGAAATCTAAGTAAGG
CTTCTTCTTAAATTCatatatttctgaaaaaattgttCTCGCGAAATGTT
CTTATCGTAAGAAAAGCATGAACAGTCAGCCCTCTCTTATTCGAATCTCT
ACAAGTAGAATACTTAAAAATACTCTACGTaactcgaatctttctctaat
tcgaaagaAATTTCTTTATCCCTGAATGATCGAATTGGATAGAGTATATA
TAACTGTATCtagaaatgttttcaaaaagattccaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027312XLOC_027312Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043628-exon-sc0004409-1491911889:6707..7092TCONS_00043628-exon-sc0004409-1491911889:6707..7092Clytia hemisphaericaexon
TCONS_00043628-exon-sc0004409-1510915933:6707..7092TCONS_00043628-exon-sc0004409-1510915933:6707..7092Clytia hemisphaericaexon
TCONS_00043628-exon-sc0004409-1575043694:6707..7092TCONS_00043628-exon-sc0004409-1575043694:6707..7092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004409supercontigsc0004409:6707..7092 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200439	0	0	0	1.62182	0.213597	1.54618	1.20626	1.38603	1.67374	0	0.800948	0.409685	0.415318	0	0.869926	0	0.154226	0	0.455975	1.16083	0.689305	0.274059	0.626818	0	0	0	0	0	0.318113
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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