TCONS_00043613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043613
Unique NameTCONS_00043613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043613 ID=TCONS_00043613|Name=TCONS_00043613|organism=Clytia hemisphaerica|type=transcript|length=883bp
aaaaaaacacacgacgggtctcctgtctagacATTCgcatgtgttccact
acagatttttttcatatttcgatttaaaagcctacttggtgcaaGAGaga
aatacacctttcccgtaattcaaactttTCAGACAGAAATGGCCGGGAAA
ATGTGcactccaccgttgtgtataaaattgtttgggaggtaaacgaacgg
gtttttgcctgcgaggaaTTAGGGAAAGTGAGTTttcaaacggtggagag
caccATAAGCTATAATAATGTGTGCGCATTAGTTTTAAGAATTagggtgg
ccgaattgctgtcccatgttttgctAGATAGTCCCAAgctagagcagttg
atggtactTCGATCACAATCGAACGTTTTGATTAGTTATCGTCTGCAGAT
AACGTCTattcatgcaatcaaaaagTAGATTTTCATGTTCacacaagttt
tttcaattttcacgcattcatgcaaacTGCTGGGGAgcctgtatggttta
aaaatagaatggccCAATCGCATACTGTAGTGAGCTGGACTGTCGATTGC
ATGTTCGATATCGATTCCGCTCGATTGACAGAGATCGAGATTGTCTCAAC
TCTTGACAGGgtttaaaatgaagaaaaaaataagctcTTACCATTTAAGT
TTATTTCGAATGCGGCATTTCCTCGCCAACTGATTGTTTTGTCCTCTTTG
TAGTGATGGCTACTGGCTAGGATACATGGAACCCTGACACTGCTGCATTT
ATGTTGCATggctggttatgatgatgaataaaatgaataaaatcgCAGCA
AAACAAGCCTTCTCCAAAATTTACCGCTATTTAAACTGTCCGTCTCTTGA
CTTATCGAGTCCCAACAGTTTAATAAAAACAGC
Run BLAST on NCBI

transcript from alignment at sc0004393:3386..4268

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043613 ID=TCONS_00043613|Name=TCONS_00043613|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0004393:3386..4268 (Clytia hemisphaerica)
GCTGTTTTTATTAAACTGTTGGGACTCGATAAGTCAAGAGACGGACAGTT
TAAATAGCGGTAAATTTTGGAGAAGGCTTGTTTTGCTGcgattttattca
ttttattcatcatcataaccagccATGCAACATAAATGCAGCAGTGTCAG
GGTTCCATGTATCCTAGCCAGTAGCCATCACTACAAAGAGGACAAAACAA
TCAGTTGGCGAGGAAATGCCGCATTCGAAATAAACTTAAATGGTAAgagc
ttatttttttcttcattttaaacCCTGTCAAGAGTTGAGACAATCTCGAT
CTCTGTCAATCGAGCGGAATCGATATCGAACATGCAATCGACAGTCCAGC
TCACTACAGTATGCGATTGggccattctatttttaaaccatacaggcTCC
CCAGCAgtttgcatgaatgcgtgaaaattgaaaaaacttgtgtGAACATG
AAAATCTActttttgattgcatgaatAGACGTTATCTGCAGACGATAACT
AATCAAAACGTTCGATTGTGATCGAagtaccatcaactgctctagcTTGG
GACTATCTagcaaaacatgggacagcaattcggccaccctAATTCTTAAA
ACTAATGCGCACACATTATTATAGCTTATggtgctctccaccgtttgaaA
ACTCACTTTCCCTAAttcctcgcaggcaaaaacccgttcgtttacctccc
aaacaattttatacacaacggtggagtgCACATTTTCCCGGCCATTTCTG
TCTGAaaagtttgaattacgggaaaggtgtatttctCTCttgcaccaagt
aggcttttaaatcgaaatatgaaaaaaatctgtagtggaacacatgcGAA
Tgtctagacaggagacccgtcgtgtgttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027299XLOC_027299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043613-exon-sc0004393-1491911889:3386..4268TCONS_00043613-exon-sc0004393-1491911889:3386..4268Clytia hemisphaericaexon
TCONS_00043613-exon-sc0004393-1510915933:3386..4268TCONS_00043613-exon-sc0004393-1510915933:3386..4268Clytia hemisphaericaexon
TCONS_00043613-exon-sc0004393-1575043694:3386..4268TCONS_00043613-exon-sc0004393-1575043694:3386..4268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004393supercontigsc0004393:3386..4268 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.1779	23.1942	16.1021	17.7847	0.713884	0.450512	0.881952	0.399989	1.96747	1.04096	1.71268	1.3987	0.940035	1.06371	0.664723	0.868043	1.00243	0.663774	0.593028	1.05578	1.12478	1.65022	22.7186	19.0408	1.13183	0.569268	2.44736	2.23776	10.2655	14.1742
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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