TCONS_00043608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043608
Unique NameTCONS_00043608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043608 ID=TCONS_00043608|Name=TCONS_00043608|organism=Clytia hemisphaerica|type=transcript|length=320bp
ATTAGACTCAATGGACCCAGCCAGACAGGCTTAAAAGCGTTATGAAAAAg
gaggcccgaacatggcccgaacatggcccgaatgactcaggtcatgttcg
ggccaaaagaattgataggtctctcggcccgaacatggcccgaagaggcc
cttgaattctcgggccatgtcaaGGGTCGTACACTGTCAGTTCGGCAAAT
TGCATAGATCAGCAACGTTGCAATATTCTGCAACGTTGCAGTTTTTCGCA
GCGTTTCCCCAAGGTTGCGCTGCTATTTTAAGCAACACTTCCAATTGAAG
CTtgtgattttgaaaattat
Run BLAST on NCBI

transcript from alignment at sc0004391:5010..5329

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043608 ID=TCONS_00043608|Name=TCONS_00043608|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at sc0004391:5010..5329 (Clytia hemisphaerica)
ataattttcaaaatcacaAGCTTCAATTGGAAGTGTTGCTTAAAATAGCA
GCGCAACCTTGGGGAAACGCTGCGAAAAACTGCAACGTTGCAGAATATTG
CAACGTTGCTGATCTATGCAATTTGCCGAACTGACAGTGTACGACCCttg
acatggcccgagaattcaagggcctcttcgggccatgttcgggccgagag
acctatcaattcttttggcccgaacatgacctgagtcattcgggccatgt
tcgggccatgttcgggcctccTTTTTCATAACGCTTTTAAGCCTGTCTGG
CTGGGTCCATTGAGTCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027295XLOC_027295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043608-exon-sc0004391-1491911889:5010..5329TCONS_00043608-exon-sc0004391-1491911889:5010..5329Clytia hemisphaericaexon
TCONS_00043608-exon-sc0004391-1510915933:5010..5329TCONS_00043608-exon-sc0004391-1510915933:5010..5329Clytia hemisphaericaexon
TCONS_00043608-exon-sc0004391-1575043694:5010..5329TCONS_00043608-exon-sc0004391-1575043694:5010..5329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004391supercontigsc0004391:5010..5329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.87622	3.11641	5.0371	7.54353	1.79129	0.68112	1.23261	1.15396	1.61583	1.68893	0.971333	3.54011	1.91289	2.47805	0.907341	1.00536	1.19954	1.22949	1.35888	2.89081	1.54494	0.904282	0	1.33253	3.77431	2.14358	0.438208	1.87067	1.06413	1.08418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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