TCONS_00043599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043599
Unique NameTCONS_00043599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043599 ID=TCONS_00043599|Name=TCONS_00043599|organism=Clytia hemisphaerica|type=transcript|length=243bp
GTCGTACGCTTACTTATATCCGTAGCATATTACTTACATACTTGCATTAA
ATGACATTAAATAGTAGTTCAAACGGAAAGATTTATTATAATCAATACTG
TCAatccagagatttgggaaaagaggataagaatcaccgctgccgctcgc
tgttttctcaTTGTTGATCATTGAATTCGGCGTCGTCTGAAGTCGCTAGG
CTAGGGAACAACTTGGCCAAGAAGGTACTGCGAAAAAAATGGC
Run BLAST on NCBI

transcript from alignment at sc0004378:3144..3386

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043599 ID=TCONS_00043599|Name=TCONS_00043599|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at sc0004378:3144..3386 (Clytia hemisphaerica)
GCCATTTTTTTCGCAGTACCTTCTTGGCCAAGTTGTTCCCTAGCCTAGCG
ACTTCAGACGACGCCGAATTCAATGATCAACAAtgagaaaacagcgagcg
gcagcggtgattcttatcctcttttcccaaatctctggatTGACAGTATT
GATTATAATAAATCTTTCCGTTTGAACTACTATTTAATGTCATTTAATGC
AAGTATGTAAGTAATATGCTACGGATATAAGTAAGCGTACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027286XLOC_027286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043599-exon-sc0004378-1491911889:3144..3386TCONS_00043599-exon-sc0004378-1491911889:3144..3386Clytia hemisphaericaexon
TCONS_00043599-exon-sc0004378-1510915933:3144..3386TCONS_00043599-exon-sc0004378-1510915933:3144..3386Clytia hemisphaericaexon
TCONS_00043599-exon-sc0004378-1575043694:3144..3386TCONS_00043599-exon-sc0004378-1575043694:3144..3386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004378supercontigsc0004378:3144..3386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.57134	2.50747	0.970469	3.79781	2.31173	1.82676	0	2.06328	0	0.894653	5.21023	0.570834	5.25831	9.37756	1.09666	0.522302	0	0.659498	10.0225	6.67404	1.94404	0	0	1.17265	0.920246	0.821298	1.17527	3.76285	2.85399	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top