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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043593 ID=TCONS_00043593|Name=TCONS_00043593|organism=Clytia hemisphaerica|type=transcript|length=1431bp
atttgtttctttttcagagaaaaaattgtaatagaTGATGCAGGTGTTGC
CTCTCTAAGACTGGGTTTTGGGAGGCCATGCATGCAAACTgtacatacac
gctttttcttttataagaatatcttctataagaatatcagggtgaaaatt
ggccaaatcgtaaaaATACCCTAATattaccctctagggtgaattttaca
gaatttgataagaatacagtcattttgtatttggttaacagaaaatactg
cttcctttgttagagatgaattgaagctttgaggaagaaatgtaatttta
acccaaatgttcactcaaaagtccaaaactctcaaattgatcatttctca
tgtttgtagaaaagtcaagtctaaaaaggTAAGAGTTTTTCTGCTTTTGA
ATGAATGGTTTGGACGTACAAATATGACATCATCACATTATCCGAAACCT
GACTGAAGGACAACCCGAAGCTTCTCCATCATGTCTCCATTGACGGCTAC
GtcccaaaattccgtcaccgataTAAAAAACGCGGAGGCAGTGTTGGCAT
GTATATACACGAGTccgtaaaattcaaaataagggACAATATCACCGAAA
AAGACACTTCAATCAAACAAATGTGGATGGAGATCAAAGGTAAACACGAC
TCTTTTCTCCTAGCTGCTTTGTATCAACCAAGTCCTACCCTAGCAGATAA
GCGTGTGTGGCTGACCAAACTCGATACCCTGCTTGTTTACGTTTCAAAAA
TCTGGACTGGCCCTATAGTCATCACCGGTGATACTAACATTGATTTGATA
GAAAACTCAGAGATCGCACAAGAATATAAAGAACTTTTACGCAACCATGG
TCTCGATCAACATATCTCCAAACCTACTAGACATGGCCGTACGCTAATAG
ACCATATCGCCTCAAACCGGATTTTAAATCCAAACCCAAAGAGTATCGAC
GCTGACCCAAACGCACTTATTATAACACAACCGCAGTAAGGCTACTGAAC
TCTGTACCTAAAGCCTGAAGAAACGTTGCGAAACTTGATTGATACACTTC
CTGATAATCCGAACACATTCAGCCTCTCTAAACCCACCTACTCGGACGTA
AGAAAAGCAATCCTCTCACTCCGTAATGATTGCTCCACCGAACAAGATAA
GATACCTTCGAAATTCTTAAAACTTTGTATTAACGAAATCACCAGTCCAA
TTTGTCACATAGTAAAGACTGCAATCGAGGAGAATGCTTTTCGAAACCAA
TGGAAAATCTCGAAGATCACGCCTATTCCGAAAGTCGATGAACCAAGTGA
ACCGTCAGATAACCGACCGATATCCATTCTGCCAATCCTTTCAAAAGTAT
ACGAAAGAATTCTAATGCTTCAAATGGTCGATCACATCGAATCCCGTAAA
CTTCTATCCAACCACCAATCTGGATTTCGAA Run BLAST on NCBI protein sequence of TCONS_00043593-protein >TCONS_00043593-protein ID=TCONS_00043593-protein|Name=TCONS_00043593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MYIHESVKFKIRDNITEKDTSIKQMWMEIKGKHDSFLLAALYQPSPTLAD
KRVWLTKLDTLLVYVSKIWTGPIVITGDTNIDLIENSEIAQEYKELLRNH
GLDQHISKPTRHGRTLIDHIASNRILNPNPKSIDADPNALIITQPQ Run BLAST on NCBI transcript from alignment at sc0004374:2830..4260 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043593 ID=TCONS_00043593|Name=TCONS_00043593|organism=Clytia hemisphaerica|type=transcript|length=1431bp|location=Sequence derived from alignment at sc0004374:2830..4260 (Clytia hemisphaerica)
TTCGAAATCCAGATTGGTGGTTGGATAGAAGTTTACGGGATTCGATGTGA
TCGACCATTTGAAGCATTAGAATTCTTTCGTATACTTTTGAAAGGATTGG
CAGAATGGATATCGGTCGGTTATCTGACGGTTCACTTGGTTCATCGACTT
TCGGAATAGGCGTGATCTTCGAGATTTTCCATTGGTTTCGAAAAGCATTC
TCCTCGATTGCAGTCTTTACTATGTGACAAATTGGACTGGTGATTTCGTT
AATACAAAGTTTTAAGAATTTCGAAGGTATCTTATCTTGTTCGGTGGAGC
AATCATTACGGAGTGAGAGGATTGCTTTTCTTACGTCCGAGTAGGTGGGT
TTAGAGAGGCTGAATGTGTTCGGATTATCAGGAAGTGTATCAATCAAGTT
TCGCAACGTTTCTTCAGGCTTTAGGTACAGAGTTCAGTAGCCTTACTGCG
GTTGTGTTATAATAAGTGCGTTTGGGTCAGCGTCGATACTCTTTGGGTTT
GGATTTAAAATCCGGTTTGAGGCGATATGGTCTATTAGCGTACGGCCATG
TCTAGTAGGTTTGGAGATATGTTGATCGAGACCATGGTTGCGTAAAAGTT
CTTTATATTCTTGTGCGATCTCTGAGTTTTCTATCAAATCAATGTTAGTA
TCACCGGTGATGACTATAGGGCCAGTCCAGATTTTTGAAACGTAAACAAG
CAGGGTATCGAGTTTGGTCAGCCACACACGCTTATCTGCTAGGGTAGGAC
TTGGTTGATACAAAGCAGCTAGGAGAAAAGAGTCGTGTTTACCTTTGATC
TCCATCCACATTTGTTTGATTGAAGTGTCTTTTTCGGTGATATTGTccct
tattttgaattttacggACTCGTGTATATACATGCCAACACTGCCTCCGC
GTTTTTTAtatcggtgacggaattttgggaCGTAGCCGTCAATGGAGACA
TGATGGAGAAGCTTCGGGTTGTCCTTCAGTCAGGTTTCGGATAATGTGAT
GATGTCATATTTGTACGTCCAAACCATTCATTCAAAAGCAGAAAAACTCT
TAcctttttagacttgacttttctacaaacatgagaaatgatcaatttga
gagttttggacttttgagtgaacatttgggttaaaattacatttcttcct
caaagcttcaattcatctctaacaaaggaagcagtattttctgttaacca
aatacaaaatgactgtattcttatcaaattctgtaaaattcaccctagag
ggtaatATTAGGGTATttttacgatttggccaattttcaccctgatattc
ttatagaagatattcttataaaagaaaaagcgtgtatgtacAGTTTGCAT
GCATGGCCTCCCAAAACCCAGTCTTAGAGAGGCAACACCTGCATCAtcta
ttacaattttttctctgaaaaagaaacaaat Coding sequence (CDS) from alignment at sc0004374:2830..4260 >TCONS_00043593 ID=TCONS_00043593|Name=TCONS_00043593|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0004374:2830..4260 (Clytia hemisphaerica)
TTACTGCGGTTGTGTTATAATAAGTGCGTTTGGGTCAGCGTCGATACTCT
TTGGGTTTGGATTTAAAATCCGGTTTGAGGCGATATGGTCTATTAGCGTA
CGGCCATGTCTAGTAGGTTTGGAGATATGTTGATCGAGACCATGGTTGCG
TAAAAGTTCTTTATATTCTTGTGCGATCTCTGAGTTTTCTATCAAATCAA
TGTTAGTATCACCGGTGATGACTATAGGGCCAGTCCAGATTTTTGAAACG
TAAACAAGCAGGGTATCGAGTTTGGTCAGCCACACACGCTTATCTGCTAG
GGTAGGACTTGGTTGATACAAAGCAGCTAGGAGAAAAGAGTCGTGTTTAC
CTTTGATCTCCATCCACATTTGTTTGATTGAAGTGTCTTTTTCGGTGATA
TTGTcccttattttgaattttacggACTCGTGTATATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043593-exon-sc0004374-1491911889:2830..4260 | TCONS_00043593-exon-sc0004374-1491911889:2830..4260 | Clytia hemisphaerica | exon |
| TCONS_00043593-exon-sc0004374-1510915933:2830..4260 | TCONS_00043593-exon-sc0004374-1510915933:2830..4260 | Clytia hemisphaerica | exon |
| TCONS_00043593-exon-sc0004374-1575043694:2830..4260 | TCONS_00043593-exon-sc0004374-1575043694:2830..4260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004374 | supercontig | sc0004374:2830..4260 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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