TCONS_00043592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043592
Unique NameTCONS_00043592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043592 ID=TCONS_00043592|Name=TCONS_00043592|organism=Clytia hemisphaerica|type=transcript|length=752bp
TTCTCGAAAGCATTTGACACAGTCGATTTCGAAATAATGATTGAAAAACT
TCATAAACTTAACTTTTCAAAGTCTGCATTACTACTAATGGCAAGTTACC
TATCAAACCGTCTACAATTCGTACAGATCAATGACAAGGAATCGAAAAGA
CTTACCGTACTGAATGGTGTTCCCCAAGGAAGTATCCTCGACCCTGTTCT
ATTTAATATCTACCTTCATGACATGTCAAAAAATACTGATGCGGAGTGTA
TGCAATATGCAGACCAGCCTGTATCGTCACACAAGACCCCAACACTTCGT
AGAGTGTACTGAAAAAATCGACAACGACATCAAAGATCTCCAGAGATGGT
CGAAAACCCAGAATCTTCTATTCAATTCGAAAAAGACGAAAACCGTGCTA
TTCTCGACACAACAAATGGCCAGACGACACCAGTTTGAATACGAGATAAA
ATCGCTTGACGAAAAAAACATCGAACGtgtcaaaacattcaaactccTCG
GTATAACGTTTAGTGAGGATATGAAATGGAACGCTCATATAAAAAAAGGT
GCTTTATTTTACTGTCCATGGAGGAATTAGTTCTATTAGTTGTTATCAAT
AGTTGTATCAGTTTTGTAGTATTTTATAGCTTAATCTAAATTCAAACTTT
GGTTTTACACCGGTCTTGCACAAGCGACTAGTACTACGTTCACTCAATCT
ACTTTTGCCAAACTCATACTACTCTACAACGGTATTTGATCGAACATACT
TG
Run BLAST on NCBI

protein sequence of TCONS_00043592-protein

>TCONS_00043592-protein ID=TCONS_00043592-protein|Name=TCONS_00043592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MVFPKEVSSTLFYLISTFMTCQKILMRSVCNMQTSLYRHTRPQHFVECTE
KIDNDIKDLQRWSKTQNLLFNSKKTKTVLFSTQQMARRHQFEYEIKSLDE
KNIERVKTFKLLGITFSEDMKWNAHIKKGALFYCPWRN
Run BLAST on NCBI

transcript from alignment at sc0004374:1881..2632

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043592 ID=TCONS_00043592|Name=TCONS_00043592|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at sc0004374:1881..2632 (Clytia hemisphaerica)
CAAGTATGTTCGATCAAATACCGTTGTAGAGTAGTATGAGTTTGGCAAAA GTAGATTGAGTGAACGTAGTACTAGTCGCTTGTGCAAGACCGGTGTAAAA CCAAAGTTTGAATTTAGATTAAGCTATAAAATACTACAAAACTGATACAA CTATTGATAACAACTAATAGAACTAATTCCTCCATGGACAGTAAAATAAA GCACCTTTTTTTATATGAGCGTTCCATTTCATATCCTCACTAAACGTTAT ACCGAggagtttgaatgttttgacaCGTTCGATGTTTTTTTCGTCAAGCG ATTTTATCTCGTATTCAAACTGGTGTCGTCTGGCCATTTGTTGTGTCGAG AATAGCACGGTTTTCGTCTTTTTCGAATTGAATAGAAGATTCTGGGTTTT CGACCATCTCTGGAGATCTTTGATGTCGTTGTCGATTTTTTCAGTACACT CTACGAAGTGTTGGGGTCTTGTGTGACGATACAGGCTGGTCTGCATATTG CATACACTCCGCATCAGTATTTTTTGACATGTCATGAAGGTAGATATTAA ATAGAACAGGGTCGAGGATACTTCCTTGGGGAACACCATTCAGTACGGTA AGTCTTTTCGATTCCTTGTCATTGATCTGTACGAATTGTAGACGGTTTGA TAGGTAACTTGCCATTAGTAGTAATGCAGACTTTGAAAAGTTAAGTTTAT GAAGTTTTTCAATCATTATTTCGAAATCGACTGTGTCAAATGCTTTCGAG AA

Coding sequence (CDS) from alignment at sc0004374:1881..2632

>TCONS_00043592 ID=TCONS_00043592|Name=TCONS_00043592|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0004374:1881..2632 (Clytia hemisphaerica)
CTAATTCCTCCATGGACAGTAAAATAAAGCACCTTTTTTTATATGAGCGT
TCCATTTCATATCCTCACTAAACGTTATACCGAggagtttgaatgttttg
acaCGTTCGATGTTTTTTTCGTCAAGCGATTTTATCTCGTATTCAAACTG
GTGTCGTCTGGCCATTTGTTGTGTCGAGAATAGCACGGTTTTCGTCTTTT
TCGAATTGAATAGAAGATTCTGGGTTTTCGACCATCTCTGGAGATCTTTG
ATGTCGTTGTCGATTTTTTCAGTACACTCTACGAAGTGTTGGGGTCTTGT
GTGACGATACAGGCTGGTCTGCATATTGCATACACTCCGCATCAGTATTT
TTTGACATGTCATGAAGGTAGATATTAAATAGAACAGGGTCGAGGATACT
TCCTTGGGGAACACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027279XLOC_027279Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043592-proteinTCONS_00043592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043592-exon-sc0004374-1491911889:1881..2632TCONS_00043592-exon-sc0004374-1491911889:1881..2632Clytia hemisphaericaexon
TCONS_00043592-exon-sc0004374-1510915933:1881..2632TCONS_00043592-exon-sc0004374-1510915933:1881..2632Clytia hemisphaericaexon
TCONS_00043592-exon-sc0004374-1575043694:1881..2632TCONS_00043592-exon-sc0004374-1575043694:1881..2632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004374supercontigsc0004374:1881..2632 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.109889 0.63524 0.490211 1.02059 0 0 0 0.260871 0.104153 0.305718 0 0.195829 0.13143 0.0636836 0.152294 0 1.80605 2.82882 0 0 2.86743 2.43229 0.64948 1.1373 3.94233 3.46527 1.00358 0.415755 0.120167 0.140232
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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