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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043589 ID=TCONS_00043589|Name=TCONS_00043589|organism=Clytia hemisphaerica|type=transcript|length=1344bp
CTTTTGTTGAAATGTCATAAATTGTCATAAATTTTACACccaaaaatgtc
ataaaatgtcataaaatgtcctaaaaaagcattaaaaactgtcataaatt
cataaaaaaatttgttaaatCAAGAGTGGGAGACCTGAAGGCCCGAACCT
TAAGGAACCTAAGAAGTAGTCACATTTCATTACATTTTAAAACCATAGAT
CATTGATGAATTTGGACGGAACATGGTAGCACTCACAGTAGACAAACTAT
TACAACAGTTTATCAATTTGAAACAAACTGGAAAAGATGTACCAGCACAA
ATCGACTTTGAGGAGATCACCTTGGAAACGCAACCTGTTGACTTGGAAGC
TGTAGCCCAAGCACGTGAGTAAAATTATCTTTGTTTCTGCAAACTTTGAT
CCAACCCACAACCATTTCGCTAAAGCCTGCTTTTAAGTGGATTGGGTTTG
AATTCAGCCTCAATCAGTCGCAGTAGGGttgcaaaaacacaaaaaagtcg
aaaaatgaaCCCTTTGTAGTGTGCcaatttcgaaaagttttaaCTACTGG
GGTGGATTTAACACTGTTTAAAATTTCTATATAAATTAGTTGCCGAAATT
CTTGGTCGTTTGAAGATCAAACTAGAGAACgtctagtctagcaagctaga
cgactaatttatacatatagtagaaataaagcaaaaagtaatgaatggaa
caattttagtcgtctagaaaccttNNNNNNNNNNNNNNAATATTGCAATT
Atcattttttcctgctcaaaataattcttgagaaaaaagaatatgtgtgg
atttgtgtattgaaagtttttcatttgagctGATTTCGtgttgagagttt
gttgttgcttgataaattgttttctcgctacgcaagtttctgcgtaNNcc
ggattcttccagtcgtttatacaaactaaatcccgtattattattagtag
tattggtattattagtattacacgcattataaacgactccagtctacttg
GTGTCAGATTAATATTGTACATTCGATACAATGAAAGACGTCTTATGCTG
GGCCGTAATGCCGCCAGGCTACTTGTTGATCATAGTGAGGACTTGATCTC
GCTCTTGCGATGTGCGAACTTCACGTAATTTGTTGTACATAATGTTCAAA
GGAACATCTGGTGACGGAACTGCGTCaacctaaagtctgtccagatataa
ttggcagtggaaacaagaaNacttaacattttccaacttttaattgcact
gttcaaaaaagataacataacccccgtttttagtaataagttggagattt
gatatttcacagaaaagtgctacccaggggtatttcgggtcccg Run BLAST on NCBI transcript from alignment at sc0004372:4797..6555- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043589 ID=TCONS_00043589|Name=TCONS_00043589|organism=Clytia hemisphaerica|type=transcript|length=1759bp|location=Sequence derived from alignment at sc0004372:4797..6555- (Clytia hemisphaerica)
CTTTTGTTGAAATGTCATAAATTGTCATAAATTTTACACCCAAAAATGTC
ATAAAATGTCATAAAATGTCCTAAAAAAGCATTAAAAACTGTCATAAATT
CATAAAAAAATTTGTTAAATCAAGAGTGGGAGACCTGAAGGCCCGAACCT
TAAGGAACCTAAGAAGTAGTCACATTTCATTACATTTTAAAACCATAGAT
CATTGATGAATTTGGACGGAACATGGTAGCACTCACAGTAGACAAACTAT
TACAACAGTTTATCAATTTGAAACAAACTGGAAAAGATGTACCAGGTATG
CCAGTGTTCTTACGTTTTTACCGTGGATGAAAGATGATTTTTCTACAACC
AAAGAGTCTGAAGACTTTCCATTACAGGCAGATTTATTTTCGAGATAATA
GAGTTTTTTGTCGCAATTCTTGGCAATGAAAATTGAAAAGAATGAACATT
TTTTGCCTAGTGCATTTTTTACTTCTCTTGCTGAGACAATTACTGCTTTT
AATTTTCTATTTGGGATTCATAATGATCATTATTGGCTCATTAAAGTCAT
GATCGGCTTCCTTCCTCTTTACAATAAACTATTCTTGCTGATTCCAAGCC
TCCTAATTCTGGATATTTTTTAAGATATGAAATTTCTTTTTTGAAAATCC
TTTAATCTATGCCTTTTCTTTGGGGGTAAATTTAATTCAATCTATTTTAT
GTGTTGTTAGCACAAATCGACTTTGAGGAGATCACCTTGGAAACGCAACC
TGTTGACTTGGAAGCTGTAGCCCAAGCACGTGAGTAAAATTATCTTTGTT
TCTGCAAACTTTGATCCAACCCACAACCATTTCGCTAAAGCCTGCTTTTA
AGTGGATTGGGTTTGAATTCAGCCTCAATCAGTCGCAGTAGGGTTGCAAA
AACACAAAAAAGTCGAAAAATGAACCCTTTGTAGTGTGCCAATTTCGAAA
AGTTTTAACTACTGGGGTGGATTTAACACTGTTTAAAATTTCTATATAAA
TTAGTTGCCGAAATTCTTGGTCGTTTGAAGATCAAACTAGAGAACGTCTA
GTCTAGCAAGCTAGACGACTAATTTATACATATAGTAGAAATAAAGCAAA
AAGTAATGAATGGAACAATTTTAGTCGTCTAGAAACCTTNNNNNNNNNNN
NNNAATATTGCAATTATCATTTTTTCCTGCTCAAAATAATTCTTGAGAAA
AAAGAATATGTGTGGATTTGTGTATTGAAAGTTTTTCATTTGAGCTGATT
TCGTGTTGAGAGTTTGTTGTTGCTTGATAAATTGTTTTCTCGCTACGCAA
GTTTCTGCGTANNCCGGATTCTTCCAGTCGTTTATACAAACTAAATCCCG
TATTATTATTAGTAGTATTGGTATTATTAGTATTACACGCATTATAAACG
ACTCCAGTCTACTTGGTGTCAGATTAATATTGTACATTCGATACAATGAA
AGACGTCTTATGCTGGGCCGTAATGCCGCCAGGCTACTTGTTGATCATAG
TGAGGACTTGATCTCGCTCTTGCGATGTGCGAACTTCACGTAATTTGTTG
TACATAATGTTCAAAGGAACATCTGGTGACGGAACTGCGTCAACCTAAAG
TCTGTCCAGATATAATTGGCAGTGGAAACAAGAANACTTAACATTTTCCA
ACTTTTAATTGCACTGTTCAAAAAAGATAACATAACCCCCGTTTTTAGTA
ATAAGTTGGAGATTTGATATTTCACAGAAAAGTGCTACCCAGGGGTATTT
CGGGTCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043589-exon-sc0004372-1575043694:6261..6555 | TCONS_00043589-exon-sc0004372-1575043694:6261..6555 | Clytia hemisphaerica | exon |
| TCONS_00043589-exon-sc0004372-1575043694:4797..5845 | TCONS_00043589-exon-sc0004372-1575043694:4797..5845 | Clytia hemisphaerica | exon |
| TCONS_00043589-exon-sc0004372-1510915933:6261..6555 | TCONS_00043589-exon-sc0004372-1510915933:6261..6555 | Clytia hemisphaerica | exon |
| TCONS_00043589-exon-sc0004372-1510915933:4797..5845 | TCONS_00043589-exon-sc0004372-1510915933:4797..5845 | Clytia hemisphaerica | exon |
| TCONS_00043589-exon-sc0004372-1491911889:6261..6555 | TCONS_00043589-exon-sc0004372-1491911889:6261..6555 | Clytia hemisphaerica | exon |
| TCONS_00043589-exon-sc0004372-1491911889:4797..5845 | TCONS_00043589-exon-sc0004372-1491911889:4797..5845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004372 | supercontig | sc0004372:4797..6555 - |
Blast
The following BLAST results are available for this feature:
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