TCONS_00043586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043586
Unique NameTCONS_00043586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043586 ID=TCONS_00043586|Name=TCONS_00043586|organism=Clytia hemisphaerica|type=transcript|length=157bp
GAGGATTTTGAGTATGATTTTCTTTTAGTAGAACTCTCCCAAAAGCTCAA
TGATTCCAGCAGCAATTGGGTATACGAAATCTGCCCATCCGATACCATAC
GCCCATCCGTATGAGCCGCCATTGTCTGTGTTTGTTTCATCTGCATAAAC
AGCCATT
Run BLAST on NCBI

transcript from alignment at sc0004367:6743..6899

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043586 ID=TCONS_00043586|Name=TCONS_00043586|organism=Clytia hemisphaerica|type=transcript|length=157bp|location=Sequence derived from alignment at sc0004367:6743..6899 (Clytia hemisphaerica)
AATGGCTGTTTATGCAGATGAAACAAACACAGACAATGGCGGCTCATACG
GATGGGCGTATGGTATCGGATGGGCAGATTTCGTATACCCAATTGCTGCT
GGAATCATTGAGCTTTTGGGAGAGTTCTACTAAAAGAAAATCATACTCAA
AATCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027273XLOC_027273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043586-exon-sc0004367-1491911889:6743..6899TCONS_00043586-exon-sc0004367-1491911889:6743..6899Clytia hemisphaericaexon
TCONS_00043586-exon-sc0004367-1510915933:6743..6899TCONS_00043586-exon-sc0004367-1510915933:6743..6899Clytia hemisphaericaexon
TCONS_00043586-exon-sc0004367-1575043694:6743..6899TCONS_00043586-exon-sc0004367-1575043694:6743..6899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004367supercontigsc0004367:6743..6899 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top