TCONS_00043580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043580
Unique NameTCONS_00043580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043580 ID=TCONS_00043580|Name=TCONS_00043580|organism=Clytia hemisphaerica|type=transcript|length=1395bp
GATTGTGGAACTTCATGTAAAGCAAAAGAAGAATGCGTTTCGTTTTTGTA
TTATCGAGTCCAACCACCAACCTGTACATTGCTCGATAGTCCAATCAATC
GGCATAGCGTCAGAAGGAATATGAGTGTTGATTACTACGAAATACAGAAT
AAATGCAGTGAAAATACTACAATTTGTAACTTTGGGACTTGTTACCCTCA
CTTCGGAAATGATTCTTATACATGTTATTGCAAAGGAAAATCGTATGGAA
AAAATTGTGAAAGGACTAACTCTGCGGAAAACCCACATGTCACATGTCAA
GAAGTCAAACAATTAATGCCTGAAGCACCAAGTGGAATGTATTGGGTTGG
CAGTGTTGGTGCAAAAAACCTATTATTTTGTGATATGATAACTGATGGAG
GAGGTTGGTTAAGAGTGGGACAAATCAATATTCGAAATAGCGAAGAGGCT
AATGCTTACAATTTCAATGCTATCGTCAAACCTTTTACCAGTTCAATTCA
CAACCTGTCAACGTCCAATTATCTCTTAAGCGGACGTCGATTTGAAGTTC
TAAATCAAATGGCAAGAATCACACAATTTCGCGTTTATTGTCGCAAGGTG
ACACGTGGACGCACAAATCATTACACTTTCGATGTCTCATCACACAGTGG
TTCAAATAACAAAATGTTTGACCATGTCTTAAAGAATGATGAACCGCCAC
CAAACAACTTATGTGGAAGAATCAAATTTCTGCCTGATGATGATTCGCAC
ATTCAAACTTTTGACTGCGCTGATTTAGTACCAATAATTGATTATGATGA
TAACAAAATTCGTTACCGCTTGTATGCTGGCATAAAAAAACCTTCCTCTG
GAAGAAGAACGGCCGGTACAACCGTTCTTAAATGTGATGAAAATGACAGT
AATGACAAAATTGGACAATGGATGTTCTTTATTCGATAATACCTCAACTC
GTTGGTGTTTAAagcctttctcaagcaagaaaagtgaagccttgCGCCGT
ATTTCGAATGACGCATTGAATCTAgaactttctttattttttttaagaga
tGTATTTTTCCAATTCTAGCGACATGTTTTACTTTCGATTTGGCGATTGT
GTGAAAATCACGTGGGCCACGCGTTCTGGAtggggaaataagtggcttca
ttttccaTCCAGGAGTTTCGGGTCTAGCCCCTTCGCGGCTTAGAAATCAA
TGTCTCAACTACATGACTTGGATTAATTTTCCCGAGCCGTAGCAGACTTT
TTAAGAGGGGGGTGAAAAGTAAGGTAATTTGAGTTTAtcctgtttcaatt
ttcttaaaaagattCAGAACTCCACTGCTTGTATTAACCACtaacaattc
aaattcaatgaaatttaaagatctttcataaaaaaacatgcagaa
Run BLAST on NCBI

protein sequence of TCONS_00043580-protein

>TCONS_00043580-protein ID=TCONS_00043580-protein|Name=TCONS_00043580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
DCGTSCKAKEECVSFLYYRVQPPTCTLLDSPINRHSVRRNMSVDYYEIQN
KCSENTTICNFGTCYPHFGNDSYTCYCKGKSYGKNCERTNSAENPHVTCQ
EVKQLMPEAPSGMYWVGSVGAKNLLFCDMITDGGGWLRVGQINIRNSEEA
NAYNFNAIVKPFTSSIHNLSTSNYLLSGRRFEVLNQMARITQFRVYCRKV
TRGRTNHYTFDVSSHSGSNNKMFDHVLKNDEPPPNNLCGRIKFLPDDDSH
IQTFDCADLVPIIDYDDNKIRYRLYAGIKKPSSGRRTAGTTVLKCDENDS
NDKIGQWMFFIR
Run BLAST on NCBI

transcript from alignment at sc0004362:463..3489+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043580 ID=TCONS_00043580|Name=TCONS_00043580|organism=Clytia hemisphaerica|type=transcript|length=3027bp|location=Sequence derived from alignment at sc0004362:463..3489+ (Clytia hemisphaerica)
GATTGTGGAACTTCATGTAAAGCAAAAGAAGAATGCGTTTCGTTTTTGTA
TTATCGAGTCCAACCACCAACCTGTACATTGCTCGATAGTCCAATCAATC
GGCATAGCGTCAGAAGGAATATGAGTGTTGATTACTACGAAATACAGGTG
ACTTGTTTTTttcacaaaactttcaatttaattcttcataaaaaaatcat
taaattttatgGCTGGGGCTTAGGCACTAATTAtttggtaattgtttgaa
tacgaggcaagtgatgttcgtgacgtagtTTATGANTTCAcaaaactttc
gcgagcagaaactttcaatttaattctttataaaaaaaccattaaatttt
tatggctggggctTTGGCACTAATTAtttggtaattgtttgaatacgagg
caagtgatgttcgtgacgtaatttatgaaaaggtctatcaggcctatgaa
taatttgaaggtTGAGCCCaatgcgttgcgcacgttcgataATTTTTAGA
TTATAGCCAAAATGAACTTCTTATTCTAGTACCATGGtgttttatgattt
tttcatatatttcaGAATAAATGCAGTGAAAATACTACAATTTGTAACTT
TGGGACTTGTTACCCTCACTTCGGAAATGATTCTTATACATGTTATTGCA
AAGGAAAATCGTATGGAAAAAATTGTGAAAGGACTAACTCTGCGGAAAAC
CCACATGTCACATGTCAAGAAGTCAAACAATTAATGCCTGAAGCACCAAG
TGGAATGTATTGGGTTGGCAGTGTTGGTGCAAAAAACCTATTATTTTGTG
ATATGATAACTGATGGAGGTTAGTTTTATCCCTACTCTACATACAGTATA
TAGCCCCCAAAAATAGGTGGCATCCAATACTGTATGTAGGTTCTGATTCA
AATAAGAAGTCTGACCTGGTAGTCGAAATGAGATTATTTTGAAACCTACA
TTTTTTTGACCAAGGAATACTGTGATTATTGAACTAGGAAAGAGAATTTT
TGACGAAGGGAATTTATTTATAAACATAATCTTTCAAATTATAATTCCAG
ACTAtagtcaaaattttaaatcgaacatgattaaattttttttatatgga
TAGATAGTCGCACTTGATTCTTCAATGACACGACGAAATTTGTCTTCCAG
TTCTGCCTGTCTGCCTGACTGTTTTCATTTCGTTTAGTCCAATGTCAgca
tgaaaaatattgttgaagtgaaaacttttgaaaaataactcaGTTTTGCT
GAAGTTTGAAAGcagaaaaaaacttcaaaactaaCCGGCATATTGGAGGT
CATAccttaggcgtacaaactttcgcgagcagaaactttcgcgaggacga
aaaatcgggAAATACACGACATatactttcgcaaatttaacggaaaaacg
cttttcgcgagcataaattttcgcgaatcaagacggaattttcacatgaa
aaaatggcttagagggacaaatacttcttggattggcttgaaatatttgt
tctttgacttattagtcttttagcaggctaaaaagtgccataaaagttac
attttattcaaagtttgaagttttacagattttcNagcaggctaaaaagt
gccataaaagttacattttattcaaagtttgaagttttacagattttcca
TTTCGTCAAGAATCTTTCGCGAGgttaaactttcgcgaatggcccttcct
agaatttttaaagacatttactttcgcgaaaagggccaaaattcgcgaaa
atcgcaaaagtttctgctcctGAAAGTTTCTGCTCCTGAAAGTTTTTACG
CTTAAAGTATACTGTTTGCACTacattgttttttctaaaatttaaaatgg
AGCCGAAAATCCCTTTTCAGCAAAGTCAACCCAAGATCATGGGGATTTAT
TCACACAATTAATACGGAAATAACACCCTACGTTGCAGAAAGAGCCCTCG
CGCACTTTTGTCAATTATTTCCCGCGTCGGTCTTATAAAGACACTGTTAA
TTAAATATTGCTTTTTTCATGTTATATTTTAGGAGGTTGGTTAAGAGTGG
GACAAATCAATATTCGAAATAGCGAAGAGGCTAATGCTTACAATTTCAAT
GCTATCGTCAAACCTTTTACCAGTTCAATTCACAACCTGTCAACGTCCAA
TTATCTCTTAAGCGGACGTCGATTTGAAGTTCTAAATCAAATGGCAAGAA
TCACACAATTTCGCGTTTATTGTCGCAAGGTGACACGTGGACGCACAAAT
CATTACACTTTCGATGTCTCATCACACAGTGGTTCAAATAACAAAATGTT
TGACCATGTCTTAAAGAATGATGAACCGCCACCAAACAACTTATGTGGAA
GAATCAAATTTCTGCCTGATGATGATTCGCACATTCAAACTTTTGACTGC
GCTGATTTAGTACCAATAATTGATTATGATGATAACAAAATTCGTTACCG
CTTGTATGCTGGCATAAAAAAACCTTCCTCTGGAAGAAGAACGGCCGGTA
CAACCGTTCTTAAATGTGATGAAAATGACAGTAATGACAAAATTGGACAA
TGGATGTTCTTTATTCGATAATACCTCAACTCGTTGGTGTTTAAagcctt
tctcaagcaagaaaagtgaagccttgCGCCGTATTTCGAATGACGCATTG
AATCTAgaactttctttattttttttaagagatGTATTTTTCCAATTCTA
GCGACATGTTTTACTTTCGATTTGGCGATTGTGTGAAAATCACGTGGGCC
ACGCGTTCTGGAtggggaaataagtggcttcattttccaTCCAGGAGTTT
CGGGTCTAGCCCCTTCGCGGCTTAGAAATCAATGTCTCAACTACATGACT
TGGATTAATTTTCCCGAGCCGTAGCAGACTTTTTAAGAGGGGGGTGAAAA
GTAAGGTAATTTGAGTTTAtcctgtttcaattttcttaaaaagattCAGA
ACTCCACTGCTTGTATTAACCACtaacaattcaaattcaatgaaatttaa
agatctttcataaaaaaacatgcagaa

Coding sequence (CDS) from alignment at sc0004362:463..3489+

>TCONS_00043580 ID=TCONS_00043580|Name=TCONS_00043580|organism=Clytia hemisphaerica|type=CDS|length=2817bp|location=Sequence derived from alignment at sc0004362:463..3489+ (Clytia hemisphaerica)
GATTGTGGAACTTCATGTAAAGCAAAAGAAGAATGCGTTTCGTTTTTGTA
TTATCGAGTCCAACCACCAACCTGTACATTGCTCGATAGTCCAATCAATC
GGCATAGCGTCAGAAGGAATATGAGTGTTGATTACTACGAAATACAGAAT
AAATGCAGTGAAAATACTACAATTTGTAACTTTGGGACTTGTTACCCTCA
CTTCGGAAATGATTCTTATACATGTTATTGCAAAGGAAAATCGTATGGAA
AAAATTGTGAAAGGACTAACTCTGCGGAAAACCCACATGTCACATGTCAA
GAAGTCAAACAATTAATGCCTGAAGCACCAAGTGGAATGTATTGGGTTGG
CAGTGTTGGTGCAAAAAACCTATTATTTTGTGATATGATAACTGATGGAG
GAGGTTGGTTAAGAGTGGGACAAATCAATATTCGAAATAGCGAAGAGGCT
AATGCTTACAATTTCAATGCTATCGTCAAACCTTTTACCAGTTCAATTCA
CAACCTGTCAACGTCCAATTATCTCTTAAGCGGACGTCGATTTGAAGTTC
TAAATCAAATGGCAAGAATCACACAATTTCGCGTTTATTGTCGCAAGGTG
ACACGTGGACGCACAAATCATTACACTTTCGATGTCTCATCACACAGTGG
TTCAAATAACAAAATGTTTGACCATGTCTTAAAGAATGATGAACCGCCAC
CAAACAACTTATGTGGAAGAATCAAATTTCTGCCTGATGATGATTCGCAC
ATTCAAACTTTTGACTGCGCTGATTTAGTACCAATAATTGATTATGATGA
TAACAAAATTCGTTACCGCTTGTATGCTGGCATAAAAAAACCTTCCTCTG
GAAGAAGAACGGCCGGTACAACCGTTCTTAAATGTGATGAAAATGACAGT
AATGACAAAATTGGACAATGGATGTTCTTTATTCGATAAGATTGTGGAAC
TTCATGTAAAGCAAAAGAAGAATGCGTTTCGTTTTTGTATTATCGAGTCC
AACCACCAACCTGTACATTGCTCGATAGTCCAATCAATCGGCATAGCGTC
AGAAGGAATATGAGTGTTGATTACTACGAAATACAGAATAAATGCAGTGA
AAATACTACAATTTGTAACTTTGGGACTTGTTACCCTCACTTCGGAAATG
ATTCTTATACATGTTATTGCAAAGGAAAATCGTATGGAAAAAATTGTGAA
AGGACTAACTCTGCGGAAAACCCACATGTCACATGTCAAGAAGTCAAACA
ATTAATGCCTGAAGCACCAAGTGGAATGTATTGGGTTGGCAGTGTTGGTG
CAAAAAACCTATTATTTTGTGATATGATAACTGATGGAGGAGGTTGGTTA
AGAGTGGGACAAATCAATATTCGAAATAGCGAAGAGGCTAATGCTTACAA
TTTCAATGCTATCGTCAAACCTTTTACCAGTTCAATTCACAACCTGTCAA
CGTCCAATTATCTCTTAAGCGGACGTCGATTTGAAGTTCTAAATCAAATG
GCAAGAATCACACAATTTCGCGTTTATTGTCGCAAGGTGACACGTGGACG
CACAAATCATTACACTTTCGATGTCTCATCACACAGTGGTTCAAATAACA
AAATGTTTGACCATGTCTTAAAGAATGATGAACCGCCACCAAACAACTTA
TGTGGAAGAATCAAATTTCTGCCTGATGATGATTCGCACATTCAAACTTT
TGACTGCGCTGATTTAGTACCAATAATTGATTATGATGATAACAAAATTC
GTTACCGCTTGTATGCTGGCATAAAAAAACCTTCCTCTGGAAGAAGAACG
GCCGGTACAACCGTTCTTAAATGTGATGAAAATGACAGTAATGACAAAAT
TGGACAATGGATGTTCTTTATTCGATAAGATTGTGGAACTTCATGTAAAG
CAAAAGAAGAATGCGTTTCGTTTTTGTATTATCGAGTCCAACCACCAACC
TGTACATTGCTCGATAGTCCAATCAATCGGCATAGCGTCAGAAGGAATAT
GAGTGTTGATTACTACGAAATACAGAATAAATGCAGTGAAAATACTACAA
TTTGTAACTTTGGGACTTGTTACCCTCACTTCGGAAATGATTCTTATACA
TGTTATTGCAAAGGAAAATCGTATGGAAAAAATTGTGAAAGGACTAACTC
TGCGGAAAACCCACATGTCACATGTCAAGAAGTCAAACAATTAATGCCTG
AAGCACCAAGTGGAATGTATTGGGTTGGCAGTGTTGGTGCAAAAAACCTA
TTATTTTGTGATATGATAACTGATGGAGGAGGTTGGTTAAGAGTGGGACA
AATCAATATTCGAAATAGCGAAGAGGCTAATGCTTACAATTTCAATGCTA
TCGTCAAACCTTTTACCAGTTCAATTCACAACCTGTCAACGTCCAATTAT
CTCTTAAGCGGACGTCGATTTGAAGTTCTAAATCAAATGGCAAGAATCAC
ACAATTTCGCGTTTATTGTCGCAAGGTGACACGTGGACGCACAAATCATT
ACACTTTCGATGTCTCATCACACAGTGGTTCAAATAACAAAATGTTTGAC
CATGTCTTAAAGAATGATGAACCGCCACCAAACAACTTATGTGGAAGAAT
CAAATTTCTGCCTGATGATGATTCGCACATTCAAACTTTTGACTGCGCTG
ATTTAGTACCAATAATTGATTATGATGATAACAAAATTCGTTACCGCTTG
TATGCTGGCATAAAAAAACCTTCCTCTGGAAGAAGAACGGCCGGTACAAC
CGTTCTTAAATGTGATGAAAATGACAGTAATGACAAAATTGGACAATGGA
TGTTCTTTATTCGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027267XLOC_027267Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043580-proteinTCONS_00043580-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043580-exon-sc0004362-1491911889:463..609TCONS_00043580-exon-sc0004362-1491911889:463..609Clytia hemisphaericaexon
TCONS_00043580-exon-sc0004362-1510915933:463..609TCONS_00043580-exon-sc0004362-1510915933:463..609Clytia hemisphaericaexon
TCONS_00043580-exon-sc0004362-1575043694:463..609TCONS_00043580-exon-sc0004362-1575043694:463..609Clytia hemisphaericaexon
TCONS_00043580-exon-sc0004362-1491911889:1028..1280TCONS_00043580-exon-sc0004362-1491911889:1028..1280Clytia hemisphaericaexon
TCONS_00043580-exon-sc0004362-1510915933:1028..1280TCONS_00043580-exon-sc0004362-1510915933:1028..1280Clytia hemisphaericaexon
TCONS_00043580-exon-sc0004362-1575043694:1028..1280TCONS_00043580-exon-sc0004362-1575043694:1028..1280Clytia hemisphaericaexon
TCONS_00043580-exon-sc0004362-1491911889:2495..3489TCONS_00043580-exon-sc0004362-1491911889:2495..3489Clytia hemisphaericaexon
TCONS_00043580-exon-sc0004362-1510915933:2495..3489TCONS_00043580-exon-sc0004362-1510915933:2495..3489Clytia hemisphaericaexon
TCONS_00043580-exon-sc0004362-1575043694:2495..3489TCONS_00043580-exon-sc0004362-1575043694:2495..3489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004362supercontigsc0004362:463..3489 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.338312	0.307213	0.086029	0.245908	0.564797	0.418786	0.372255	0.809213	0.854647	0.733893	0.449576	0.705652	2.37154	2.07947	0.371135	0.454978	0.465976	0.272097	2.02527	2.20126	1.16805	0.879522	0.626265	1.18149	0.582141	1.37566	7.19338	4.69628	0.0402061	0.113546
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014716Fibrinogen_a/b/g_C_1
IPR013032EGF-like_CS
IPR003609Pan_app
IPR000742EGF-like_dom
IPR002181Fibrinogen_a/b/g_C_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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