TCONS_00043574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043574
Unique NameTCONS_00043574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043574 ID=TCONS_00043574|Name=TCONS_00043574|organism=Clytia hemisphaerica|type=transcript|length=592bp
aaaaaaatggctcttaatatTCCAAAAAACCCTCCCCCAGAACTATAGTT
GGTGCTgcataatttttgaaagttgTTCCTCCTCATGCTATTAgtgctat
ttttttatttcctctAATTATAGTAGCGATAAAGGTGGGTTTTTTTCACC
TAAAAcagtgaaaataaaatgaaatcttCTACTCCCCCCTTCCTTATTTC
GTTATTAGGCAGAAATTAGTATCGGATGTTATGTTAAAATTTGTGACTTG
TTATGATTATTTCAGATCAGAGGCAAAGGGCTGGACCTGCCCACGATTAT
GAAGAACTATTATCTTATTGATTGGATTGGTGCAAATTCGTTTCGCACCA
GTCATTATCCATACGCTGATGAGATCCTTTATCTTGCGGACGAAAGAGGA
ATTGTGGTTATCGACGAGTGTCCAGGCGTTGGTATCCTTGAACAAAACAT
GGGTGACGAGAACATAGCACAtcatatggacgttatgaaggAGTTGGTAC
ATCGAGACAAGAATCATCCGTCCGTTGTCATGTGGTCAGTTGCCAACGAA
CCAGACACCAAAAGTTCCAAGAGTGACCCTTATTTCAAGTAA
Run BLAST on NCBI

transcript from alignment at sc0004356:4076..5214-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043574 ID=TCONS_00043574|Name=TCONS_00043574|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at sc0004356:4076..5214- (Clytia hemisphaerica)
AAAAAAATGGCTCTTAATATTCCAAAAAACCCTCCCCCAGAACTATAGTT
GGTGCTGCATAATTTTTGAAAGTTGTTCCTCCTCATGCTATTAGTGCTAT
TTTTTTATTTCCTCTAATTATAGTAGCGATAAAGGTGGGTTTTTTTCACC
TAAAACAGTGAAAATAAAATGAAATCTTCTACTCCCCCCTTCCTTATTTC
GTTATTAGGCAGAAATTAGTATCGGATGTTATGTTAAAATTTGTGACTTG
TTATGATTATTTCAGATCAGAGGCAAAGGGCTGGACCTGCCCACGATTAT
GAAGAACTATTATCTTATTGATTGGATTGGTGCAAATTCGTTTCGCACCA
GTCATTATCCATACGCTGATGAGATCCTTTATCTTGCGGACGAAAGAGGA
ATTGTGGTTATCGACGAGTGTCCAGGCGTTGGTATCCTTGAGTGAGTAAT
TAAAATTATTCTAATAAATAATAATTTACCACCAATTCATGATTTGCACC
ATTGCAATGTCTTCTGACATTACATCACGGACCCACGAAAAATGATTGGT
TGTAATAGTGACCTAAAATCAATCAATACGTCTATTGTAACCAATCAGCT
GTTAGGTCCATGATGTAACATCGGAAGACATTGCAATGGTGCATATCGTG
ATTATTGAATTCTGAAGAAAAAATTTCTGAAATGAAATCTGAAATTTCTC
ATTATTTTGTTGGCATAATAAATGGAAAATATTGTCGAAATGTTCAGCAA
GATTGGATTAATAATCTTGACGGCCTGACGATTTTCGACCAATTAATTTA
AATTAACACACTAGCTATTTTCAACAACCGATAGAAAACGACCATGATAA
AATGTAATATAAATGTCACGATTTATAAACTAAAGGAACTACTTGCAAAT
CTATTTGGTGAGATCAGGGTATGGACAAACGTCCTCATTCTTACTCTCGC
AATTACCTAATTTTGAGCTTGTCTGCTTCTCTCATCAGACAAAACATGGG
TGACGAGAACATAGCACATCATATGGACGTTATGAAGGAGTTGGTACATC
GAGACAAGAATCATCCGTCCGTTGTCATGTGGTCAGTTGCCAACGAACCA
GACACCAAAAGTTCCAAGAGTGACCCTTATTTCAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027261XLOC_027261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043574-exon-sc0004356-1575043694:4774..5214TCONS_00043574-exon-sc0004356-1575043694:4774..5214Clytia hemisphaericaexon
TCONS_00043574-exon-sc0004356-1575043694:4076..4226TCONS_00043574-exon-sc0004356-1575043694:4076..4226Clytia hemisphaericaexon
TCONS_00043574-exon-sc0004356-1510915933:4774..5214TCONS_00043574-exon-sc0004356-1510915933:4774..5214Clytia hemisphaericaexon
TCONS_00043574-exon-sc0004356-1510915933:4076..4226TCONS_00043574-exon-sc0004356-1510915933:4076..4226Clytia hemisphaericaexon
TCONS_00043574-exon-sc0004356-1491911889:4774..5214TCONS_00043574-exon-sc0004356-1491911889:4774..5214Clytia hemisphaericaexon
TCONS_00043574-exon-sc0004356-1491911889:4076..4226TCONS_00043574-exon-sc0004356-1491911889:4076..4226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004356supercontigsc0004356:4076..5214 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66736	2.52924	0.839054	0.718273	21.486	19.1502	21.0793	19.1767	8.82061	9.66881	11.5433	6.72441	7.76237	5.88602	9.31003	14.0553	12.3082	9.47945	6.00661	5.5642	8.86655	10.7465	11.2582	10.6215	11.1388	10.0299	5.96974	3.25331	17.7867	14.4556
Blast
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BLAST of TCONS_00043574 vs. Swiss-Prot (Human)
Match: BGLR (Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 8.406e-39
Identity = 63/109 (57.80%), Postives = 83/109 (76.15%), Query Frame = 2 
Query:  266 IRGKGLDLPTIMKNYYLIDWIGANSFRTSHYPYADEILYLADERGIVVIDECPGVGI-LEQNMGDENIAHHMDVMKELVHRDKNHPSVVMWSVANEPDTKSSKSDPYFK 589
            IRGKG D P ++K++ L+ W+GAN+FRTSHYPYA+E++ + D  GIVVIDECPGVG+ L Q   + ++ HHM VM+E+V RDKNHP+VVMWSVANEP +    +  Y K
Sbjct:  356 IRGKGFDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLK 464
The following BLAST results are available for this feature:
BLAST of TCONS_00043574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BGLR8.406e-3957.80Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV... [more]
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