TCONS_00043572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043572
Unique NameTCONS_00043572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043572 ID=TCONS_00043572|Name=TCONS_00043572|organism=Clytia hemisphaerica|type=transcript|length=242bp
CCCCAATGTGTTTTAACCATTAATTTACGATTTATTGCctcctttgaaaa
ttcttttattgttttatattgTTTTAATAGACCCTTTTAATTAGCCTTTT
ATCctagaatcaattttttgtatgATATGTAGATACGTATTTTTCAACCT
agaaatgtcatttttaacCTGATGATGAGCAGTTAAGACTCGAAAAGCtt
tgtttgaataaaatcaaatttttgtgttgtttatttattttg
Run BLAST on NCBI

transcript from alignment at sc0004355:1809..2050

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043572 ID=TCONS_00043572|Name=TCONS_00043572|organism=Clytia hemisphaerica|type=transcript|length=242bp|location=Sequence derived from alignment at sc0004355:1809..2050 (Clytia hemisphaerica)
caaaataaataaacaacacaaaaatttgattttattcaaacaaaGCTTTT
CGAGTCTTAACTGCTCATCATCAGgttaaaaatgacatttctAGGTTGAA
AAATACGTATCTACATATcatacaaaaaattgattctagGATAAAAGGCT
AATTAAAAGGGTCTATTAAAAcaatataaaacaataaaagaattttcaaa
ggagGCAATAAATCGTAAATTAATGGTTAAAACACATTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027259XLOC_027259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043572-exon-sc0004355-1491911889:1809..2050TCONS_00043572-exon-sc0004355-1491911889:1809..2050Clytia hemisphaericaexon
TCONS_00043572-exon-sc0004355-1510915933:1809..2050TCONS_00043572-exon-sc0004355-1510915933:1809..2050Clytia hemisphaericaexon
TCONS_00043572-exon-sc0004355-1575043694:1809..2050TCONS_00043572-exon-sc0004355-1575043694:1809..2050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004355supercontigsc0004355:1809..2050 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.849349	0.986175	0	8.22201	0	6.71874	14.2015	3.66982	3.63653	7.05941	6.96086	8.58717	15.5945	2.47287	1.59226	0.653846	0	2.77763	0	0.842119	0	0	0	4.6757	8.34589	0	3.82375	1.93345	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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