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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043571 ID=TCONS_00043571|Name=TCONS_00043571|organism=Clytia hemisphaerica|type=transcript|length=779bp
cataatgtccgtaaaccagaaaataaaaaagtaattgccttatGGACATT
CCAGGAGAGTTTTTTATGGATATACACACCTAGATATTTCGCTGAGTCAA
CAACTTCAAGTACTTGGTTGTGCATTGAATATGGTTGAATGATAGTATTA
CGCTTGTTGGTGATTCGTAAAACCTTACATTTGTCCAGGTTGAACTCCAT
TGACCAATCATGTTCCCAATTCATGAATTGGTTTAAGTCTTCCTGAAGGC
TTATGGCATCATTAATTGAGTCAATGACTCTGTAAATGAGTGCATCATCA
GCAAACAATCTTATTTTACATTTAACCAATTCAGGAAGATCGTTTATATA
AACTAAAAACAAAAGAGGGCCGAGGACTGTGCCTTGAGGAACTCCAGAGA
TaacattagctttttcagatgacTCGCCGTTAACGACAACAGTTTGAGTG
CGATCGGAGAGGTAGTTGGTGATCCAAAGAGTTTTACCCCTTACGCCATA
ATGATGAAGTTTTAGACAGAGTTTTTTGTGGTCAACTTTATCAAAAGCCT
TTGAAAAGTCAAGTAGAATTGAGTCGATTTGCTTAGCTTCGTTCAGGGAC
TTAGCAAGGTCTTGGATGGTTGTTACAAGTTGTGATTCACATGACCGATG
TTTCCTGAAACCATGCGGGCTATCTGTCAGAATGTTGGTGTTGTCAAGGT
GGTCCATAATGTTGCTGTGTAAAATATGCTCCAAAATTTTACAGGATATG
GAGGTAAGACTGATAGGCCTGTAGTTACA Run BLAST on NCBI transcript from alignment at sc0004353:887..1728+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043571 ID=TCONS_00043571|Name=TCONS_00043571|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0004353:887..1728+ (Clytia hemisphaerica)
cataatgtccgtaaaccagaaaataaaaaagtaattgccttatGGACATT
CCAGGAGAGTTTTTTATGGATATACACACCTAGATATTTCGCTGAGTCAA
CAACTTCAAGTACTTGGTTGTGCATTGAATATGGTTGAATGATAGTATTA
CGCTTGTTGGTGATTCGTAAAACCTTACATTTGTCCAGGTTGAACTCCAT
TGACCAATCATGTTCCCAATTCATGAATTGGTTTAAGTCTTCCTGAAGGC
TTATGGCATCATTAATTGAGTCAATGACTCTGTAAATGAGTGCATCATCA
GCAAACAATCTTATTTTANCATCATTAATTGAGTCAATGACTCTGTAAAT
GAGTGCATCATCAGCAAACAATCTTATTTTACATTTAACCAATTCAGGAA
GATCGTTTATATAAACTAAAAACAAAAGAGGGCCGAGGACTGTGCCTTGA
GGAACTCCAGAGATaacattagctttttcagatgacTCGCCGTTAACGAC
AACAGTTTGAGTGCGATCGGAGAGGTAGTTGGTGATCCAAAGAGTTTTAC
CCCTTACGCCATAATGATGAAGTTTTAGACAGAGTTTTTTGTGGTCAACT
TTATCAAAAGCCTTTGAAAAGTCAAGTAGAATTGAGTCGATTTGCTTAGC
TTCGTTCAGGGACTTAGCAAGGTCTTGGATGGTTGTTACAAGTTGTGATT
CACATGACCGATGTTTCCTGAAACCATGCGGGCTATCTGTCAGAATGTTG
GTGTTGTCAAGGTGGTCCATAATGTTGCTGTGTAAAATATGCTCCAAAAT
TTTACAGGATATGGAGGTAAGACTGATAGGCCTGTAGTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043571-exon-sc0004353-1491911889:887..1143 | TCONS_00043571-exon-sc0004353-1491911889:887..1143 | Clytia hemisphaerica | exon |
| TCONS_00043571-exon-sc0004353-1510915933:887..1143 | TCONS_00043571-exon-sc0004353-1510915933:887..1143 | Clytia hemisphaerica | exon |
| TCONS_00043571-exon-sc0004353-1575043694:887..1143 | TCONS_00043571-exon-sc0004353-1575043694:887..1143 | Clytia hemisphaerica | exon |
| TCONS_00043571-exon-sc0004353-1491911889:1207..1728 | TCONS_00043571-exon-sc0004353-1491911889:1207..1728 | Clytia hemisphaerica | exon |
| TCONS_00043571-exon-sc0004353-1510915933:1207..1728 | TCONS_00043571-exon-sc0004353-1510915933:1207..1728 | Clytia hemisphaerica | exon |
| TCONS_00043571-exon-sc0004353-1575043694:1207..1728 | TCONS_00043571-exon-sc0004353-1575043694:1207..1728 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004353 | supercontig | sc0004353:887..1728 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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