TCONS_00043563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043563
Unique NameTCONS_00043563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043563 ID=TCONS_00043563|Name=TCONS_00043563|organism=Clytia hemisphaerica|type=transcript|length=800bp
TAACGGTCGGAGGTTTGTAACtgattgggtcggtttgaaaggtgattggg
tcggtttaaaaGACGATCgggtcggtttgaaaggtgactgggtcggtttg
aaaggtgattgggtcggtttaagaggtgattgggtcggtttaaaaGGTGA
TCGGGTCGGTTTTAAAGGTGATCGGGTCGGTTTTAAAGTTGATCGGGTCG
GTTTTAAAGGTGATCGGGTCGGTTTAACAAGTGATTGAGTGAGTTTAGTA
ATACTACTCAGTTTTAAGATCAATCGGAAGGAGTGCCGGTTTAAGTCGCC
GGTTTTTTTCGGATTTCCCCGGGAATCGGATTACTCAATCCTCTAAGTCT
GGTCTGGAAAAtgtcacatttcactggatgcgaTAAAGTATGAACAACGC
GggctcaaaatttttttcttagaaaaaggaaaaaaagctCATTGAATTTA
TAAATTGCAAAAATGGATGCAATTAAAGCCAGGTTAAATGAATTAGAGAA
CAAGCTGGTGCCCAATTCTAGAAACTTTCGGTAAGCATTCACTTTCTTCT
TactttgttatgatttttcttAACTTGCAGGCCTGGCCTGACCTGGACCA
CGTCTGACTGCAGAATTCggacttgtatgagtgtataatttttttacccT
TAATTCATgtattcaaaaacaaattctttTAGGCTAACTGTTAAGATCGC
TATTCCTCCAGGAAGATNATTGCGGtatatgaaaattgtaaaattgacgt
ttatactgcaattgcagtataaatttactaccgcaattgagggatttccc
Run BLAST on NCBI

transcript from alignment at sc0004350:2732..3531

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043563 ID=TCONS_00043563|Name=TCONS_00043563|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at sc0004350:2732..3531 (Clytia hemisphaerica)
gggaaatccctcaattgcggtagtaaatttatactgcaattgcagtataa
acgtcaattttacaattttcatataCCGCAATNATCTTCCTGGAGGAATA
GCGATCTTAACAGTTAGCCTAaaagaatttgtttttgaatacATGAATTA
AgggtaaaaaaattatacactcatacaagtccGAATTCTGCAGTCAGACG
TGGTCCAGGTCAGGCCAGGCCTGCAAGTTaagaaaaatcataacaaagtA
AGAAGAAAGTGAATGCTTACCGAAAGTTTCTAGAATTGGGCACCAGCTTG
TTCTCTAATTCATTTAACCTGGCTTTAATTGCATCCATTTTTGCAATTTA
TAAATTCAATGagctttttttcctttttctaagaaaaaaattttgagccC
GCGTTGTTCATACTTTAtcgcatccagtgaaatgtgacaTTTTCCAGACC
AGACTTAGAGGATTGAGTAATCCGATTCCCGGGGAAATCCGAAAAAAACC
GGCGACTTAAACCGGCACTCCTTCCGATTGATCTTAAAACTGAGTAGTAT
TACTAAACTCACTCAATCACTTGTTAAACCGACCCGATCACCTTTAAAAC
CGACCCGATCAACTTTAAAACCGACCCGATCACCTTTAAAACCGACCCGA
TCACCttttaaaccgacccaatcacctcttaaaccgacccaatcaccttt
caaaccgacccagtcacctttcaaaccgacccGATCGTCttttaaaccga
cccaatcacctttcaaaccgacccaatcaGTTACAAACCTCCGACCGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027250XLOC_027250Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043563-exon-sc0004350-1491911889:2732..3531TCONS_00043563-exon-sc0004350-1491911889:2732..3531Clytia hemisphaericaexon
TCONS_00043563-exon-sc0004350-1510915933:2732..3531TCONS_00043563-exon-sc0004350-1510915933:2732..3531Clytia hemisphaericaexon
TCONS_00043563-exon-sc0004350-1575043694:2732..3531TCONS_00043563-exon-sc0004350-1575043694:2732..3531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004350supercontigsc0004350:2732..3531 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54027	0.292694	0.815629	0.398983	3.19585	2.871	4.50883	4.07189	3.68822	4.45937	3.59008	3.30477	3.64793	2.60404	2.8197	1.97535	4.64505	4.43091	3.71118	5.26196	3.63174	3.85852	1.17418	2.44889	3.50096	3.8283	10.4388	10.5663	2.04474	2.99935
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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