TCONS_00043562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043562
Unique NameTCONS_00043562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043562 ID=TCONS_00043562|Name=TCONS_00043562|organism=Clytia hemisphaerica|type=transcript|length=272bp
AGACAACAAATGTTTGAATTTGACCAAACTGTACAAGATGAGGATAAAGA
TTCGTATCATTTTGTCGCTTATCTTCCCATCAATGGACGTATGTATGAGT
TGGACGGTCTAAAAGAAGGTCCAATCGATCTGGGTATGTAGATGCTTCTT
TTATGAAATTCTGTGAGGCAACACCAGTTGGTCTCATTAAGGTCACTTAA
GAATTTTAtagaataaaatattttataaaataaaatcaaatagaATTATC
TACCAGCTGCGTCAAAAGTAAG
Run BLAST on NCBI

transcript from alignment at sc0004349:739..1010

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043562 ID=TCONS_00043562|Name=TCONS_00043562|organism=Clytia hemisphaerica|type=transcript|length=272bp|location=Sequence derived from alignment at sc0004349:739..1010 (Clytia hemisphaerica)
CTTACTTTTGACGCAGCTGGTAGATAATtctatttgattttattttataa
aatattttattctaTAAAATTCTTAAGTGACCTTAATGAGACCAACTGGT
GTTGCCTCACAGAATTTCATAAAAGAAGCATCTACATACCCAGATCGATT
GGACCTTCTTTTAGACCGTCCAACTCATACATACGTCCATTGATGGGAAG
ATAAGCGACAAAATGATACGAATCTTTATCCTCATCTTGTACAGTTTGGT
CAAATTCAAACATTTGTTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027249XLOC_027249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043562-exon-sc0004349-1491911889:739..1010TCONS_00043562-exon-sc0004349-1491911889:739..1010Clytia hemisphaericaexon
TCONS_00043562-exon-sc0004349-1510915933:739..1010TCONS_00043562-exon-sc0004349-1510915933:739..1010Clytia hemisphaericaexon
TCONS_00043562-exon-sc0004349-1575043694:739..1010TCONS_00043562-exon-sc0004349-1575043694:739..1010Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004349supercontigsc0004349:739..1010 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.605653	0	0.670264	11.0315	18.0819	9.19177	2.80253	8.27679	3.30139	14.015	11.7805	8.72525	8.91087	2.94131	2.06705	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00043562 vs. Swiss-Prot (Human)
Match: UCHL5 (Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Homo sapiens GN=UCHL5 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.531e-17
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 RQQMFEFDQTVQDEDKDSYHFVAYLPINGRMYELDGLKEGPIDLG 135
            RQQMFEFD     +++D++HFV+Y+P+NGR+YELDGL+EGPIDLG
Sbjct:  145 RQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLG 189
The following BLAST results are available for this feature:
BLAST of TCONS_00043562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UCHL53.531e-1766.67Ubiquitin carboxyl-terminal hydrolase isozyme L5 O... [more]
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