TCONS_00043561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043561
Unique NameTCONS_00043561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043561 ID=TCONS_00043561|Name=TCONS_00043561|organism=Clytia hemisphaerica|type=transcript|length=387bp
CTAAAAACAAGcttaggtcggcaaaattttgccggcctTCGGCCGGATTT
GGACGGCACTTACGTGCCGACTTACTTTTACTTGAATTTCGAGGGCTGAA
GAAGTAGAAGAAGGAACACCTGCCAGATATGAAACTCGAGACCAGGTTTG
CACACTTTATTATAAGAGTGTTTTTATTGGTAATGCTAATGCTAATGGGT
GAAGCATTCATATAGAAATGCAGCTAAATAAGGATGACAGACTGTACACT
ATGCTCTTacagattatttttttctttataaataaaGCAGTAATTTATGA
TTGGTACCTATGTAAACTAggaatgaaattatgaaattatatatCTTTAT
TGCAATGTTAAGAATTCATTGAAATGATAAGTCATag
Run BLAST on NCBI

transcript from alignment at sc0004348:3989..4375

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043561 ID=TCONS_00043561|Name=TCONS_00043561|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0004348:3989..4375 (Clytia hemisphaerica)
ctATGACTTATCATTTCAATGAATTCTTAACATTGCAATAAAGatatata
atttcataatttcattccTAGTTTACATAGGTACCAATCATAAATTACTG
CtttatttataaagaaaaaaataatctgtAAGAGCATAGTGTACAGTCTG
TCATCCTTATTTAGCTGCATTTCTATATGAATGCTTCACCCATTAGCATT
AGCATTACCAATAAAAACACTCTTATAATAAAGTGTGCAAACCTGGTCTC
GAGTTTCATATCTGGCAGGTGTTCCTTCTTCTACTTCTTCAGCCCTCGAA
ATTCAAGTAAAAGTAAGTCGGCACGTAAGTGCCGTCCAAATCCGGCCGAa
ggccggcaaaattttgccgacctaagCTTGTTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027248XLOC_027248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043561-exon-sc0004348-1491911889:3989..4375TCONS_00043561-exon-sc0004348-1491911889:3989..4375Clytia hemisphaericaexon
TCONS_00043561-exon-sc0004348-1510915933:3989..4375TCONS_00043561-exon-sc0004348-1510915933:3989..4375Clytia hemisphaericaexon
TCONS_00043561-exon-sc0004348-1575043694:3989..4375TCONS_00043561-exon-sc0004348-1575043694:3989..4375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004348supercontigsc0004348:3989..4375 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56385	3.37963	1.6432	3.71509	13.1551	9.57698	11.6717	13.0906	5.94585	9.84851	9.5763	6.92528	13.4537	12.9153	7.79073	10.9432	7.24788	11.3893	19.649	22.6337	21.8222	15.3034	8.76858	10.9579	8.35148	10.5626	20.9032	19.596	24.6228	20.3468
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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