TCONS_00043555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043555
Unique NameTCONS_00043555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043555 ID=TCONS_00043555|Name=TCONS_00043555|organism=Clytia hemisphaerica|type=transcript|length=422bp
TTAATATGTTCCCTAAGGGATTCAAACTTTTTGTAAGGACGAAGTCTTGA
AATAATGATCTCTCGATTGGATACATTTTAAGCTAGAAAATCAAAAACAC
AAAACTAGTTTAGAACTATATACAAACTCGAAAGCTTAAGCTAAGGTGGA
TCAAAATATACCAGACTATatacaataaaaatttgaattcaaGTTGAGAA
CAATATTCTctctctacagggtgtcccgacgaaaaaaagtatcgagttcg
agCATGATTCTGTAGtgtagaaggttgttgcgttTTTTTTGTagaagtta
ttcataaaagatgtctcatgacaattaatatgacacagaattgcaaattt
agtgaaacacacacaagaactttctttctatagcaGCGGTACGattcgat
actttttttcgagACACCCTGC
Run BLAST on NCBI

transcript from alignment at sc0004342:2991..3412

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043555 ID=TCONS_00043555|Name=TCONS_00043555|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0004342:2991..3412 (Clytia hemisphaerica)
GCAGGGTGTctcgaaaaaaagtatcgaatCGTACCGCtgctatagaaaga
aagttcttgtgtgtgtttcactaaatttgcaattctgtgtcatattaatt
gtcatgagacatcttttatgaataacttctACAAAAAAaacgcaacaacc
ttctacaCTACAGAATCATGctcgaactcgatactttttttcgtcgggac
accctgtagagagAGAATATTGTTCTCAACttgaattcaaatttttattg
tatATAGTCTGGTATATTTTGATCCACCTTAGCTTAAGCTTTCGAGTTTG
TATATAGTTCTAAACTAGTTTTGTGTTTTTGATTTTCTAGCTTAAAATGT
ATCCAATCGAGAGATCATTATTTCAAGACTTCGTCCTTACAAAAAGTTTG
AATCCCTTAGGGAACATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027242XLOC_027242Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043555-exon-sc0004342-1491911889:2991..3412TCONS_00043555-exon-sc0004342-1491911889:2991..3412Clytia hemisphaericaexon
TCONS_00043555-exon-sc0004342-1510915933:2991..3412TCONS_00043555-exon-sc0004342-1510915933:2991..3412Clytia hemisphaericaexon
TCONS_00043555-exon-sc0004342-1575043694:2991..3412TCONS_00043555-exon-sc0004342-1575043694:2991..3412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004342supercontigsc0004342:2991..3412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.499687	0.162424	0.18859	0.383647	0	0.177496	0.642426	0.201931	0.561435	0.173857	0.506249	0.780181	3.10171	2.53091	0.945795	0.41516	0.125038	0	2.30177	3.89088	0.322084	0.942606	0	0.694503	0.357661	0.478806	0.913559	0.243744	0.369742	0.194526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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