TCONS_00043549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043549
Unique NameTCONS_00043549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043549 ID=TCONS_00043549|Name=TCONS_00043549|organism=Clytia hemisphaerica|type=transcript|length=785bp
cccactcggtgcgaaaattagactggtcgaaattgatggtcaaatgattg
acaggtatgaaaactcagtcagaaatgagaaactcagaaactcaggcagt
cagaaaagagaaagacggGATCAGAGATAAGGATCACATCTCGGAGGTTT
GTATCTTACGTTTTCCCTGCAGTGATTGTGAGTATTGATTCTTATTCTTC
ATTCTGACAAATTAGAACTCAGCTCAGGAAGCCTTACCATCATAAAAAGG
AGACCTGCCCGTTCAATAATCAAACTTGTGTGTCgaacccattgagtttc
aagcccgaagggctagaggtcaatctctaacctttcggTATTACCAATTT
TACCAGAATCGCTAAGCACGAGTATGACAAATCAAGGTCGTTGACACAGA
AGCTATGTGAAAAGATAACCGACATAGCCCAACCCCCCGAAAGCCCTGAT
ATCGTGACAACCAAACAATACCTAAAGATCAGAGCCAACCATCTACGTGA
ATCTATGAGCAGAGCTGACTTAAAAGCAAACGACATCGGACAGACAGACG
CCTCCATATGGCTTTCCGCATTACCGCTCAAGAGTGAGGGATTTAACCTA
TCAAAGCGAGAGTTTGTGGATGCAATCTTCATCAGGTATGGGTGGCCACC
AAATCGTCTACCAACCGAATGTATCTGTGGAGCAGCCTTCCATGTTGATC
ATGCTTTATGCTGTAAAGTAGGTGGTCTGATTACTCTACGTCACAACGAG
ATACGTGATGTCACTGCCGAGCTTTTATCCACCGT
Run BLAST on NCBI

transcript from alignment at sc0004338:6380..7164

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043549 ID=TCONS_00043549|Name=TCONS_00043549|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0004338:6380..7164 (Clytia hemisphaerica)
ACGGTGGATAAAAGCTCGGCAGTGACATCACGTATCTCGTTGTGACGTAG
AGTAATCAGACCACCTACTTTACAGCATAAAGCATGATCAACATGGAAGG
CTGCTCCACAGATACATTCGGTTGGTAGACGATTTGGTGGCCACCCATAC
CTGATGAAGATTGCATCCACAAACTCTCGCTTTGATAGGTTAAATCCCTC
ACTCTTGAGCGGTAATGCGGAAAGCCATATGGAGGCGTCTGTCTGTCCGA
TGTCGTTTGCTTTTAAGTCAGCTCTGCTCATAGATTCACGTAGATGGTTG
GCTCTGATCTTTAGGTATTGTTTGGTTGTCACGATATCAGGGCTTTCGGG
GGGTTGGGCTATGTCGGTTATCTTTTCACATAGCTTCTGTGTCAACGACC
TTGATTTGTCATACTCGTGCTTAGCGATTCTGGTAAAATTGGTAATAccg
aaaggttagagattgacctctagcccttcgggcttgaaactcaatgggtt
cGACACACAAGTTTGATTATTGAACGGGCAGGTCTCCTTTTTATGATGGT
AAGGCTTCCTGAGCTGAGTTCTAATTTGTCAGAATGAAGAATAAGAATCA
ATACTCACAATCACTGCAGGGAAAACGTAAGATACAAACCTCCGAGATGT
GATCCTTATCTCTGATCccgtctttctcttttctgactgcctgagtttct
gagtttctcatttctgactgagttttcatacctgtcaatcatttgaccat
caatttcgaccagtctaattttcgcaccgagtggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027236XLOC_027236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043549-exon-sc0004338-1491911889:6380..7164TCONS_00043549-exon-sc0004338-1491911889:6380..7164Clytia hemisphaericaexon
TCONS_00043549-exon-sc0004338-1510915933:6380..7164TCONS_00043549-exon-sc0004338-1510915933:6380..7164Clytia hemisphaericaexon
TCONS_00043549-exon-sc0004338-1575043694:6380..7164TCONS_00043549-exon-sc0004338-1575043694:6380..7164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004338supercontigsc0004338:6380..7164 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.363136	0.542388	0	0.0707622	2.98962	2.90116	2.97905	3.92736	2.34169	3.58038	2.90248	2.49305	2.28539	2.05862	0.296635	0.112114	0.212797	0.306446	0.224571	0	0.229995	1.1669	0	0	3.53539	3.89148	0.0969786	0.212788	0.714949	0.38251
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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