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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043545 ID=TCONS_00043545|Name=TCONS_00043545|organism=Clytia hemisphaerica|type=transcript|length=873bp
tttacggACGATTTAATTTCGGACACgtccgaaaaaaaaacttgaaaaaa
gatttctcaaaatatgtaagtgtcatatatcaaaagaaagataatttcaa
tacgaacaaaaaaattgCCTACAGGAAAGCCTGGAAATCATCTCACAAAG
AGTTAGAAGACCTCGAATACATCATggttttcatcttctttttatattat
gtttaaattctttaaaattactATTATGTTTAACTTTGTATGAGTATGAT
TTTTAGGTTCAAAATACGATTTTAAGGGATTGACACTCAGAAAGatcttt
ttcattatttttgatgCCATTGCAGTGTAAatatgtaaacattcgaatgc
GAATAAGTGTTATTTACATTCATCAATTCATCAACTTGACAACTCCTGAA
aggtatatttttcattttttgaaaagtaactTTTAACATGATCTGTGTAT
ATATTTCATCTGTTTTTATTTAgagtaaaaatgaaagaaatattaAAAGT
TTAAATAAAAGTGGTGTATTGTAGAATGGCTACATTGGGCAGAGTATGCA
TTTTATGTGAAGAAGATGTTCAGCCAGACAATCTAGTTGAAGTCAAGAAA
AAAGGCTTCGACAGACTCGTTCAAGTTGCCAAACAAAGAAAGCTCGAAGA
TTTGCACAGCAACTTGAAGGAACGGGAGGTTGGAAACGTCTACGTCCATC
ATGACTGTAGGAGAAAGTTTGTGGACAAAAGGAAAATGGATGATGGTCAT
ATTACCGTCAAGAAGCGGTTGAGATCATCAGTTGGAGCGATGGGTTCATT
CAACTGGAAGTTGCATTGCATTTACTGCGGTGAACAAAAAGATGAGAAGC
GGAAAAGTAATGAAATCAGCGAG Run BLAST on NCBI protein sequence of TCONS_00043545-protein >TCONS_00043545-protein ID=TCONS_00043545-protein|Name=TCONS_00043545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MATLGRVCILCEEDVQPDNLVEVKKKGFDRLVQVAKQRKLEDLHSNLKER
EVGNVYVHHDCRRKFVDKRKMDDGHITVKKRLRSSVGAMGSFNWKLHCIY
CGEQKDEKRKSNEISE Run BLAST on NCBI transcript from alignment at sc0004336:5346..7314+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043545 ID=TCONS_00043545|Name=TCONS_00043545|organism=Clytia hemisphaerica|type=transcript|length=1969bp|location=Sequence derived from alignment at sc0004336:5346..7314+ (Clytia hemisphaerica)
tttacggACGATTTAATTTCGGACACgtccgaaaaaaaaacttgaaaaaa
gatttctcaaaatatgtaagtgtcatatatcaaaagaaagataatttcaa
tacgaacaaaaaaattgCCTACAGGAAAGCCTGGAAATCATCTCACAAAG
AGTTAGAAGACCTCGAATACATCATggttttcatcttctttttatattat
gtttaaattctttaaaattactATTATGTTTAACTTTGTATGAGTATGAT
TTTTAGGTTCAAAATACGATTTTAAGGGATTGACACTCAGAAAGatcttt
ttcattatttttgatgCCATTGCAGTGTAAatatgtaaacattcgaatgc
GAATAAGTGTTATTTACATTCATCAATTCATCAACTTGACAACTCCTGAA
aggtatatttttcattttttgaaaagtaactTTTAACATGATCTGTGTAT
ATATTTCATCTGTTTTTATTTAgagtaaaaatgaaagaaatattaAAAGT
TTAAATAAAAGTGGTGTATTGTAGAATGGCTACATTGGGCAGAGTATGCA
TTTTATGTGAAGAAGATGTTCAGCCAGACAATCTAGTTGAAGTCAAGAAA
AAAGGCTTCGACAGACTCGTTCAAGTTGCCAAACAAAGAAAGCTCGAAGA
TTTGCACAGGTTTTTATATCTCAGTAGTTTTAAGAAAAGGCCCAGGAAAT
GTGTAAATTAGATTCATNaaaaattcttgaaaaacctaaacattttgacc
aaaaatgctataattttgaccattttttgcacgaaagggatctaaaattt
tggggaaaatgcactctaagggtacgattttcactgatttttgctgcacc
gtaagggtctaattttaaaagccaatttttggcccgcacataccgtcagt
ctgcaaacccagtgcccccccggggTGTATATATTTCATCTGTTTTTATT
TAgagtaaaaatgaaagaaatattaAAAGTTTAAATAAAAGTGCTGTATT
GTAGAATGGCTACATTGGGCAGAGTATGCATTTTATGTGAAGAAGATGTT
CAGCCAGACAATCTAGttgaagtcaataaaaaagGCTTCGACAGACTCGT
TCAAGTTGCCAAACAAAGAAAGCTCGAAGATTTGCACAGGTTTTTATATC
TCAGTAGTTTTAAGAAAAGGCCCAGGAAATGTGTAAATTAGATTCATTAG
AACCTTAGAAGTATAGAGTTTTCGACAGTCCCTTTTAATAGTTTACTACC
TATACTAGAAAATGCAAGGTTGGGTTTAGGTTTTTTAAGGTTCATCCTCT
TCCGCTGTTTATCAGCATAGTAATGTCAGGATTTTTTAACCTGTTAGTTT
TCTTAACgcgacacgctgaagctctaaagatcgctgaaaactaacatctg
aggaaaatggtCATGTTTctatgaaaaagtttctatgaAAAAACTTGCTG
AGATGGCATATTCTTCAGATTGGATATTTTCGCCCacgtctttagagctt
tagcgtactgggccagaTAATACggaatctgttatcaggttaggatTTTT
GAACAAGGGTAGATCAAATAGGTACTCTTGAGaagaaaattttagtttta
aggCTCATAACCAtcacggctagttcgaaacacagATTACAGGTCATAGT
TCACTTCCTCATCTAAAACATGCTTTATACGAGTACTTATTGTATTAGAA
CATACGTTATAGACATTTCTAACAATAACTATGATTTCGTTAATCTTATT
TACAGCAACTTGAAGGAACGGGAGGTTGGAAACGTCTACGTCCATCATGA
CTGTAGGAGAAAGTTTGTGGACAAAAGGAAAATGGATGATGGTCATATTA
CCGTCAAGAAGCGGTTGAGATCATCAGTTGGAGCGATGGGTTCATTCAAC
TGGAAGTTGCATTGCATTTACTGCGGTGAACAAAAAGATGAGAAGCGGAA
AAGTAATGAAATCAGCGAG Coding sequence (CDS) from alignment at sc0004336:5346..7314+ >TCONS_00043545 ID=TCONS_00043545|Name=TCONS_00043545|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0004336:5346..7314+ (Clytia hemisphaerica)
ATGGCTACATTGGGCAGAGTATGCATTTTATGTGAAGAAGATGTTCAGCC
AGACAATCTAGTTGAAGTCAAGAAAAAAGGCTTCGACAGACTCGTTCAAG
TTGCCAAACAAAGAAAGCTCGAAGATTTGCACAGCAACTTGAAGGAACGG
GAGGTTGGAAACGTCTACGTCCATCATGACTGTAGGAGAAAGTTTGTGGA
CAAAAGGAAAATGGATGATGGTCATATTACCGTCAAGAAGCGGTTGAGAT
CATCAGTTGGAGCGATGGGTTCATTCAACTGGAAGTTGCATTGCATTTAC
TGCGGTGAACAAAAAGATGAGAAGCGGAAAAGTAATGAAATCAGCGAGAT
GGCTACATTGGGCAGAGTATGCATTTTATGTGAAGAAGATGTTCAGCCAG
ACAATCTAGTTGAAGTCAAGAAAAAAGGCTTCGACAGACTCGTTCAAGTT
GCCAAACAAAGAAAGCTCGAAGATTTGCACAGCAACTTGAAGGAACGGGA
GGTTGGAAACGTCTACGTCCATCATGACTGTAGGAGAAAGTTTGTGGACA
AAAGGAAAATGGATGATGGTCATATTACCGTCAAGAAGCGGTTGAGATCA
TCAGTTGGAGCGATGGGTTCATTCAACTGGAAGTTGCATTGCATTTACTG
CGGTGAACAAAAAGATGAGAAGCGGAAAAGTAATGAAATCAGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043545-exon-sc0004336-1491911889:5346..6004 | TCONS_00043545-exon-sc0004336-1491911889:5346..6004 | Clytia hemisphaerica | exon |
| TCONS_00043545-exon-sc0004336-1510915933:5346..6004 | TCONS_00043545-exon-sc0004336-1510915933:5346..6004 | Clytia hemisphaerica | exon |
| TCONS_00043545-exon-sc0004336-1575043694:5346..6004 | TCONS_00043545-exon-sc0004336-1575043694:5346..6004 | Clytia hemisphaerica | exon |
| TCONS_00043545-exon-sc0004336-1491911889:7101..7314 | TCONS_00043545-exon-sc0004336-1491911889:7101..7314 | Clytia hemisphaerica | exon |
| TCONS_00043545-exon-sc0004336-1510915933:7101..7314 | TCONS_00043545-exon-sc0004336-1510915933:7101..7314 | Clytia hemisphaerica | exon |
| TCONS_00043545-exon-sc0004336-1575043694:7101..7314 | TCONS_00043545-exon-sc0004336-1575043694:7101..7314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004336 | supercontig | sc0004336:5346..7314 + |
Blast
The following BLAST results are available for this feature:
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