TCONS_00043527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043527
Unique NameTCONS_00043527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043527 ID=TCONS_00043527|Name=TCONS_00043527|organism=Clytia hemisphaerica|type=transcript|length=553bp
NNGGGTACAGATGAAGGTTTTGTTTGTGGGCAAAGTCCTTGTATATTGAC
AAACGAAAACATATTCAGTGTAGGTTTAGAAGTAGTTTTGGTAGTCGGGT
CAGCGTCAGCAAGGGCAGTCACTGTCCCAGTAGATTCCTTGGAAATGTTG
GTTCCATTCTGGGGTGCTGGGGTGGTAGATGATGTAGGGGATGTTGACGA
TTGAATGTTTGTTGAGGTTGATGTGACAAATCGTGGTTCCTGAATTGTAT
TTGTTGGTTTTGGTTGCTGAAACAATTGTTCACAAGAGAGATTATTTCTG
TGCAAAAGTTGTCCAGGATTGCGAGAAAAGGTTCATCATTacgattgttt
tgctttttctgaAATCGTTTGGTTCCCTTAACATGCGTGAATTTGCAGTC
AAGATAAAAGCATTCCCCTCTTGTAATAGATGATGAGCACATCCTTGGGT
GGAAGCTTTGGCACTTGGTACCTAGGTTGCAGCCTCTTGGTTGTTTGTTG
CcatatttgagcaattttgtacAGGCTTTAGGATGGATAAATTGACAGTC
TCG
Run BLAST on NCBI

protein sequence of TCONS_00043527-protein

>TCONS_00043527-protein ID=TCONS_00043527-protein|Name=TCONS_00043527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
RDCQFIHPKACTKLLKYGNKQPRGCNLGTKCQSFHPRMCSSSITRGECFY
LDCKFTHVKGTKRFQKKQNNRNDEPFLAILDNFCTEIISLVNNCFSNQNQ
QIQFRNHDLSHQPQQTFNRQHPLHHLPPQHPRMEPTFPRNLLGQ
Run BLAST on NCBI

transcript from alignment at sc0004324:9906..10458

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043527 ID=TCONS_00043527|Name=TCONS_00043527|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0004324:9906..10458 (Clytia hemisphaerica)
CGAGACTGTCAATTTATCCATCCTAAAGCCTgtacaaaattgctcaaata
tgGCAACAAACAACCAAGAGGCTGCAACCTAGGTACCAAGTGCCAAAGCT
TCCACCCAAGGATGTGCTCATCATCTATTACAAGAGGGGAATGCTTTTAT
CTTGACTGCAAATTCACGCATGTTAAGGGAACCAAACGATTtcagaaaaa
gcaaaacaatcgtAATGATGAACCTTTTCTCGCAATCCTGGACAACTTTT
GCACAGAAATAATCTCTCTTGTGAACAATTGTTTCAGCAACCAAAACCAA
CAAATACAATTCAGGAACCACGATTTGTCACATCAACCTCAACAAACATT
CAATCGTCAACATCCCCTACATCATCTACCACCCCAGCACCCCAGAATGG
AACCAACATTTCCAAGGAATCTACTGGGACAGTGACTGCCCTTGCTGACG
CTGACCCGACTACCAAAACTACTTCTAAACCTACACTGAATATGTTTTCG
TTTGTCAATATACAAGGACTTTGCCCACAAACAAAACCTTCATCTGTACC
CNN

Coding sequence (CDS) from alignment at sc0004324:9906..10458

>TCONS_00043527 ID=TCONS_00043527|Name=TCONS_00043527|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0004324:9906..10458 (Clytia hemisphaerica)
CGAGACTGTCAATTTATCCATCCTAAAGCCTgtacaaaattgctcaaata
tgGCAACAAACAACCAAGAGGCTGCAACCTAGGTACCAAGTGCCAAAGCT
TCCACCCAAGGATGTGCTCATCATCTATTACAAGAGGGGAATGCTTTTAT
CTTGACTGCAAATTCACGCATGTTAAGGGAACCAAACGATTtcagaaaaa
gcaaaacaatcgtAATGATGAACCTTTTCTCGCAATCCTGGACAACTTTT
GCACAGAAATAATCTCTCTTGTGAACAATTGTTTCAGCAACCAAAACCAA
CAAATACAATTCAGGAACCACGATTTGTCACATCAACCTCAACAAACATT
CAATCGTCAACATCCCCTACATCATCTACCACCCCAGCACCCCAGAATGG
AACCAACATTTCCAAGGAATCTACTGGGACAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027215XLOC_027215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043527-exon-sc0004324-1491911889:9906..10458TCONS_00043527-exon-sc0004324-1491911889:9906..10458Clytia hemisphaericaexon
TCONS_00043527-exon-sc0004324-1510915933:9906..10458TCONS_00043527-exon-sc0004324-1510915933:9906..10458Clytia hemisphaericaexon
TCONS_00043527-exon-sc0004324-1575043694:9906..10458TCONS_00043527-exon-sc0004324-1575043694:9906..10458Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043527-proteinTCONS_00043527-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004324supercontigsc0004324:9906..10458 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82874	1.83201	3.03087	1.54086	4.07118	2.09474	4.14451	4.89891	3.05011	2.63735	3.79116	3.27406	3.15641	4.16429	1.99162	1.72823	1.53056	1.22177	1.7587	3.49373	3.11977	4.71863	0.23328	1.45741	3.69176	5.02019	4.46744	3.13742	4.3651	3.5681
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top