TCONS_00043525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043525
Unique NameTCONS_00043525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043525 ID=TCONS_00043525|Name=TCONS_00043525|organism=Clytia hemisphaerica|type=transcript|length=650bp
TTTTAGTgcttaaagaaaaagaatttaagGAATACTTTTATGGGTTAAAA
TTATGTGTGGAGATAATGGAGCAGCCCCTTTCGTCCCTGTCTACAAaaaa
ctactcaaaaaatggttgCCCAAAAACAAACGATTATTCTATCAAGGTGT
TGTATTGATTTTAACCTATATTACATACACATGTTACCATTGTGCTAAAC
GTCCTGTTAGTGTGGTGAAAGGTGAATTAGCACCAAATTGTACTAAATAT
CCAGATCCAAATAAAACTTGCAATGCATGGAAGCCTTTTGATACACCGAA
TAGTAAAGAAATATTTGGACTGTTAGACTGCGCTTTCTTGATGTCCTATG
CATTATCTATGTTTGTCAGTGGCTACATTGCTGAGCATACAAATATGAGA
ATTTATTTAGCTTCTGGCATGATTACGACTGGTTTGTTTACTTGCATGTT
CGGAATGGCATTTTACTGGCAGATTCATCAGCTCTCTTACTTCTTTTTGG
TTCAAATTCTTACTGGAATCACACAATCAACAGGTTGGCCATGTGTCGTT
GAAGCTGTGGGATCGTGGTTTCCCGAGGGTCGCAGAGGTTTTGTCATGGG
AATATGGAATACACACGTATCCGTCGGCAATATTATAGGGTCTGCAATCG
Run BLAST on NCBI

protein sequence of TCONS_00043525-protein

>TCONS_00043525-protein ID=TCONS_00043525-protein|Name=TCONS_00043525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MCGDNGAAPFVPVYKKLLKKWLPKNKRLFYQGVVLILTYITYTCYHCAKR
PVSVVKGELAPNCTKYPDPNKTCNAWKPFDTPNSKEIFGLLDCAFLMSYA
LSMFVSGYIAEHTNMRIYLASGMITTGLFTCMFGMAFYWQIHQLSYFFLV
QILTGITQSTGWPCVVEAVGSWFPEGRRGFVMGIWNTHVSVGNIIGSAI
Run BLAST on NCBI

transcript from alignment at sc0004322:5613..7536+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043525 ID=TCONS_00043525|Name=TCONS_00043525|organism=Clytia hemisphaerica|type=transcript|length=1924bp|location=Sequence derived from alignment at sc0004322:5613..7536+ (Clytia hemisphaerica)
TTTTAGTgcttaaagaaaaagaatttaagGAATACTTTTATGGGTTAAAA
TTATGTGTGGAGATAATGGAGCAGCCCCTTTCGTCCCTGTCTACAAaaaa
ctactcaaaaaatggttgCCCAAAAACAAACGATTATTCTATCAAGGTGT
TGTATTGATTTTAACCTATATTACATACACATGTTACCATTGTGCTAAAC
GTCCTGTTAGTGTGGTGAAAGGTGAATTAGCACCAAATTGTACTAAATAT
CCAGATCCAAATAAAACTTGCAATGCATGGAAGCCTTTTGATACACCGAA
TAGTAAAGAAATATTTGGACTGTTAGACTGCGCTTTCTTGATGTCCTATG
CATTATCTATGTTTGTCAGTGGCTACATTGCTGAGCATACAAATATGAGA
ATTTATTTAGCTTCTGGCATGATTACGACTGGTTTGTTTACTTGCATGTT
CGGAATGGCATTTTACTGGCAGATTCATCAGCTCTCTTACTTCTTTTTGG
TTCAAATTCTTACTGGAATCACACAATCAACAGGTAatatatttgttttt
tatttcgcTCTTATATAAGCCAGGTAAATTTTTTTGTAACGATGTTTGAA
AGGGGTAGTCTAGTTTAAACACGTTATccttttttaagttttcatcCACA
AAGCGGGTCAGGACTCTAAAAAGTGATTTGAGTGTTATCATTCTGAAAAT
GTGAAAACAACCTCTATGACTGGACACAGATTTCGCGCGCTTTGATTCCA
AGTAATTTGattgacaaaatgaaaaaagaaacataCTATGGTAAAAGCAC
CTAACTTCATAAGGTCATGAATGTTAAGCATTGTCTGGTCAGGATAGTGC
TTGGATGGGGGACTGCCTGGGTACTTCCGGTTTTGTGGAATTTTTTCCAA
GGATTCAATTGGcgcgtaagaggaagcccaagaacaaaactacgccttgt
taaaaaattgcaaaaccaaacaaaaatatcttcaaattataaaccaaaat
actctacagaagaaatcgtcatCGATTGGGCACtaacagatgatgatgaa
tgattcatttttcaaataggcagtcgaactctattagctttaaaaaGCTA
Natgatgatgaatgattcatttttcaaataggcagtcgaactctattagc
tttaaagctagtacagatttgtacacatttttcgactttaaagaatttAT
ATATACATTAAAATTAACACATACATTAAcattaattgataaaaattacg
tcattttaATGTTTGCTGTCAAACAAAGCTAGGGTGTGCTTGTTGACATG
TCGACATTTGGACACTAGGTCTGATCAACTAGCATCAAAAAGCATTTTCC
AATTCCCAAATAAAGTAAACTAGAGCTGATTTAGATAAAAAGTACAAATC
CCAATAAGAGTAAGagtaataatgatttttttgcaggaaactcatttcaa
cttaTTCACAGATATTTCTAATCTCAGAATAATCATAAAAAACTAGCTAT
ATTTATGCTTAACGTGCAAAATAAGCTTAACATGAGGATAATCTGCTCTT
TATCGTATATAGAGAGGAAATTTGATTGATTGTGGCATACTCGATAAAAT
TCTTACTGTGCGTTTACACAGGTTTAATTTCAAAGAAAGCTGAACTGTGG
TACTCACAGTAGCATCCATACTCATTAAATATTCTTATTCTCTTTAGAAT
TTTGTGATGACCATGAAACAAACCCAATAAATCTATACTTTATTAGACTA
AATTGGTATTTTAAATTAGGTATGATAATAAAATTAAATCACTTTTTCAC
TCTACAGGTTGGCCATGTGTCGTTGAAGCTGTGGGATCGTGGTTTCCCGA
GGGTCGCAGAGGTTTTGTCATGGGAATATGGAATACACACGTATCCGTCG
GCAATATTATAGGGTCTGCAATCG

Coding sequence (CDS) from alignment at sc0004322:5613..7536+

>TCONS_00043525 ID=TCONS_00043525|Name=TCONS_00043525|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at sc0004322:5613..7536+ (Clytia hemisphaerica)
ATGTGTGGAGATAATGGAGCAGCCCCTTTCGTCCCTGTCTACAAaaaact
actcaaaaaatggttgCCCAAAAACAAACGATTATTCTATCAAGGTGTTG
TATTGATTTTAACCTATATTACATACACATGTTACCATTGTGCTAAACGT
CCTGTTAGTGTGGTGAAAGGTGAATTAGCACCAAATTGTACTAAATATCC
AGATCCAAATAAAACTTGCAATGCATGGAAGCCTTTTGATACACCGAATA
GTAAAGAAATATTTGGACTGTTAGACTGCGCTTTCTTGATGTCCTATGCA
TTATCTATGTTTGTCAGTGGCTACATTGCTGAGCATACAAATATGAGAAT
TTATTTAGCTTCTGGCATGATTACGACTGGTTTGTTTACTTGCATGTTCG
GAATGGCATTTTACTGGCAGATTCATCAGCTCTCTTACTTCTTTTTGGTT
CAAATTCTTACTGGAATCACACAATCAACAGGTTGGCCATGTGTCGTTGA
AGCTGTGGGATCGTGGTTTCCCGAGGGTCGCAGAGGTTTTGTCATGGGAA
TATGGAATACACACGTATCCGTCGGCAATATTATAGGGTCTGCAATCATG
TGTGGAGATAATGGAGCAGCCCCTTTCGTCCCTGTCTACAAaaaactact
caaaaaatggttgCCCAAAAACAAACGATTATTCTATCAAGGTGTTGTAT
TGATTTTAACCTATATTACATACACATGTTACCATTGTGCTAAACGTCCT
GTTAGTGTGGTGAAAGGTGAATTAGCACCAAATTGTACTAAATATCCAGA
TCCAAATAAAACTTGCAATGCATGGAAGCCTTTTGATACACCGAATAGTA
AAGAAATATTTGGACTGTTAGACTGCGCTTTCTTGATGTCCTATGCATTA
TCTATGTTTGTCAGTGGCTACATTGCTGAGCATACAAATATGAGAATTTA
TTTAGCTTCTGGCATGATTACGACTGGTTTGTTTACTTGCATGTTCGGAA
TGGCATTTTACTGGCAGATTCATCAGCTCTCTTACTTCTTTTTGGTTCAA
ATTCTTACTGGAATCACACAATCAACAGGTTGGCCATGTGTCGTTGAAGC
TGTGGGATCGTGGTTTCCCGAGGGTCGCAGAGGTTTTGTCATGGGAATAT
GGAATACACACGTATCCGTCGGCAATATTATAGGGTCTGCAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027213XLOC_027213Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043525-proteinTCONS_00043525-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043525-exon-sc0004322-1491911889:5613..6145TCONS_00043525-exon-sc0004322-1491911889:5613..6145Clytia hemisphaericaexon
TCONS_00043525-exon-sc0004322-1510915933:5613..6145TCONS_00043525-exon-sc0004322-1510915933:5613..6145Clytia hemisphaericaexon
TCONS_00043525-exon-sc0004322-1575043694:5613..6145TCONS_00043525-exon-sc0004322-1575043694:5613..6145Clytia hemisphaericaexon
TCONS_00043525-exon-sc0004322-1491911889:7420..7536TCONS_00043525-exon-sc0004322-1491911889:7420..7536Clytia hemisphaericaexon
TCONS_00043525-exon-sc0004322-1510915933:7420..7536TCONS_00043525-exon-sc0004322-1510915933:7420..7536Clytia hemisphaericaexon
TCONS_00043525-exon-sc0004322-1575043694:7420..7536TCONS_00043525-exon-sc0004322-1575043694:7420..7536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004322supercontigsc0004322:5613..7536 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.9576	5.63829	2.17504	1.30313	33.6386	25.8478	26.4404	26.1322	15.5437	21.1864	15.4234	11.541	9.0864	8.34772	8.78903	11.9589	12.0693	11.3323	2.46095	10.7268	17.0109	13.1609	12.515	14.1479	16.7507	18.6081	16.1908	11.5075	18.9466	21.2144
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00043525 vs. Swiss-Prot (Human)
Match: G6PT3 (Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 2.136e-58
Identity = 85/179 (47.49%), Postives = 129/179 (72.07%), Query Frame = 2 
Query:  137 FYQGVVLILTYITYTCYHCAKRPVSVVKGELAPNCTKYPDP-NKTCN-------AWKPFDTPNSKEIFGLLDCAFLMSYALSMFVSGYIAEHTNMRIYLASGMITTGLFTCMFGMAFYWQIHQLSYFFLVQILTGITQSTGWPCVVEAVGSWFPEGRRGFVMGIWNTHVSVGNIIGSAI 649
            +++G++L+LT++ Y CYH +++P+S+VK  L  NC++   P N T +       +W PFD  N KE+ G +D AFL++YA+ MF+SG   E   +R YL++GM+ +GLFT +FG+ ++W IH+L YF ++Q+  G+ Q+TGWP VV  VG+WF +G+RGF+MGIWN+H SVGNI+GS I
Sbjct:   20 WFRGLILLLTFLIYACYHMSRKPISIVKSRLHQNCSEQIKPINDTHSLNDTMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFISGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLI 198
The following BLAST results are available for this feature:
BLAST of TCONS_00043525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G6PT32.136e-5847.49Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapi... [more]
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