TCONS_00043519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043519
Unique NameTCONS_00043519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043519 ID=TCONS_00043519|Name=TCONS_00043519|organism=Clytia hemisphaerica|type=transcript|length=796bp
tttaaatatatgaatgattttaatttaaGTCATTTTCTATCAATCTGCTA
TAAAATTTGTCTAGCCTATAATAATCCACATAGACTGACAAAATTCTTCT
TGCGCTACATTTTCAGCACCAGAAGCTATTCAAAAGTTTGGCGATCGAAC
TTTTCGAAGAATGTACAAAAATGTCGGTCATCAAAGGGTCATCACCGAAG
TCACCAAAGTTAACTTGTTCATCTTCACCAGGGGACAACGAACAGACGAA
TAtcttggtgaatgcaatgAAAACCTTCAAGGAAAACTTCGATGACTTTA
GATCATACACTATATCCatccaagaaaaattgaagACGCAATCTTCCCTG
GACCTTTCACAATCACCTTCCGCCAACAACTCATCACCTACAACCTCCAT
TTCCAACAAATTATTACGTCATCTACAAAATCGTGTGCAACAATTACGTC
ATGAAAATATTCAATTGAAAGAGAATTTAAAGAACTCGTTAACGGTCTTT
GATACAAGTGATATAACGAGGCGAGTAGAAGATTTGGAATCTCAACTTCA
GGTTAGAATATTTAACCGTCGAATGTCATGGATCGTATTGAAACAGCAGG
GGCCgcggctccactttgaaagtAATTGGGTCGTGATATActgactaagg
aggcgccaccatgaacaaaaaaaaatttaattgtaaaaaggtgaaaatga
aaaaaacccgCGGAAAAAGTTTGTTACGGTGAAAGGTTTCAGGCTGTAAA
ATAGAGTTTTTATAACTAGACTCTTATGCGTCAGAATTCGGATCAG
Run BLAST on NCBI

transcript from alignment at sc0004311:3303..6673-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043519 ID=TCONS_00043519|Name=TCONS_00043519|organism=Clytia hemisphaerica|type=transcript|length=3371bp|location=Sequence derived from alignment at sc0004311:3303..6673- (Clytia hemisphaerica)
TTTAAATATATGAATGATTTTAATTTAAGTCATTTTCTATCAATCTGCTA
TAAAATTTGTCTAGCCTATAATAATCCACATAGACTGACAAAATTCTTCT
TGCGCTACATTTTCAGCACCAGAAGCTATTCAAAAGTTTGGCGATCGAAC
TTTTCGAAGAATGTACAAAAATGTCGGTCATCAAAGGGTCATCACCGAAG
TCACCAAAGTGTAAGTAATATGATTTTATTTGTCACCTTCACCGTGGAAG
TAAACTCATGTGACCTCAAAACTTTTGCTCTTTCACTCGCCTTCAAACTA
AATAAACAGAACACAAAAATCTAAATTCTTCATCAAAATTTCTCAAATAT
ACATGTGTATATATACGCAGTATGCAGTGCTGACGAGTCCTGATAAGGAC
GAAATGCATATGCTGCTCTGCCACCCAAATCTCAAATGATTTTCTGGTTT
TGAGATGCTGGCTAAATTAATCTGGCCAGTCATGAAATACACCTATTCTG
CCACCCAAATCTACTGATTGAAAATAGTTGGACAGAAATGCTTGTTTTTC
ACGTGTATAAACTTTATTAAGTTTGCAATTTGGTATCTACCCGTAGGCAG
AGGAGCATGTCGCTCTTTATGTGTTAGGTCTTGACGGTTCTTTGATATAC
AGAGGTACGTGATATTCCAACTCTTCTTTCGTTTCACAGGTTAACTTGTT
CATCTTCACCAGGGGACAACGAACAGACGAATATCTTGGTGAATGCAATG
GTAACTTCTATCCTCTCTTTCTCCCTCTCTTCTTCTTTCGATAGAATATT
TTACGTTTGATCCGTCGAATAAACTGAAGACTGAATTTTGCTAGCACTAA
TTCAAACTGTCGACTTTTTGTCTTACTTCCGTTGGGTTTGAAAGACTGTT
GAAAATTGACTGAAAATTGATATCGATGTAACTAATTAATCGATTTCAGA
AATTTCTTATTTCAGAAAACCTTCAAGGAAAACTTCGATGACTTTAGATC
ATACACTATATCCATCCAAGAAAAATTGAAGGTAAATGAAATTCTTCAAG
TTCCCTCCCAAAGCTTTGTCGCAAAAAATATTATAGCTGCAAAAAATCGC
AATGAGATAACATTTATGAGAAGATTTTTATGCATTATTCACTCATTCAT
TTCTGCCAAGTCAATGAGACAGGGATGATATATGATTTTAAATATTTCGG
TTCATTGTACATTGTTCATTGTATCCTTTATTTTCAGACGCAATCTTCCC
TGGACCTTTCACAATCACCTTCCGCCAACAACTCATCACCTACAACCTCC
ATTTCCAACAAATTATTACGTCATCTACAAAATCGTGTGCAACAATTACG
TCATGAAAATATTCAATTGAAAGAGAATTTAAAGAACTCGTTAACGGTAT
GCCATTTGACGTTATCTATTGCCCATTTTTCATGATATGGTATTTTAAGA
TGTTTTTTGTGGATAACTTTCGGTGAAACCTAATTCAAATGTCCATTGAA
ACCAAATCCGTACACCAAGATGAAAAGACTTGTCTTTCCAAACTTTAACC
TGAATGTATTTTCTCAACTCCTTTGCTATCCACTTCCTTCGTCATCCCCG
TTTATTTTCATAAAGTCACTGTAAAGACAGGGATTTAAAACTGTCTGTAC
ACCATCCCCTTGACAATGGGGTACAGCTCGAGTGAAAACGTGTTAACAAA
TCGTGAGAGATTAAATAAGGATATGTTGTTTTGTTATGAATAGTGCGAAA
GATATGTGTGTGCTTTTAACTCATTCTTCTTGTGGGTTTAAAAAACTAAC
GTCAAAAGTAAATGATTTTGCCTTTCAAAATCTTTTCGTCGATGCGGTTG
TATCTAGAACCTTCACTTTCTCGTGAAAGGTAAGCATCCTAGTTTCAATT
GATTACTGATCACAATATTTTAACTAATCTTTAGGACAGGGATTTAATAT
TGTCCGTGCACCATCCCCTTGACAATTGGATCAGGGGGGGGGGGTACATG
TTCAGTGTAGTGACCCATGGCCGGTGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCCTTGGAATGAA
CGCCCTCTCTAGTGGAGGGGCGTTTATTAGAAACTTGTGACTTTCAATAC
AGATTTTAGTCATTTCTTGTAACCAGAGCAGTTTTTGATGCAATTTTAAT
CGTTGAACCAAAGAAGTTTTGCACTAAAATTCTGATAAAGAACTAAAACA
AAGAAAGGGCATAGTTGCTATAAATATTAGACTTTAAACTAAAATAATTA
AAAAAACGCCCCCTTCTTTTAAACGCCCCTCTTAAATATTAAATAAACAA
CCCGGGCGTTTATTCGAAGTAATACGGTAAATAGGTTCAAGGAGCCAGCG
AAAGCTTTTCTATCCCAAAATTTTAGAAAAAAATCATGGTTAGTATCAAT
GACTGTATTTGTTATTGCTTATCAGTACTTTTTCAAAAGAACCAGAAATG
GTGGTTAGTTTCCTGCAGCGTATTAAAAGGGTGGTATGAGGATTGAAATG
GGTGGTGCTAGCTACTACAGGTTACTGAAAGGGTGGTATAGGGATTTATA
TGGGCGGTGATATCTACTACAAGTTACTAAAGGGTGGTATAAGGATTCGA
ATTGGTGGTAATAGCTACTACATGGTAGTAAAAGGGGTGGTCCCCTAAAA
AAAATCCCAGAAAAAACTAGTACCATGTACTAAAAAAGGGTGGTGGTCCC
AAATTTTTTAAAAATTACCGAAAATCAGGTTATTACCCCATGGGTTACTA
CACTGAACATGTACCCCCCCCTGATTGGATACAGCTCGAGTGAAAACGTG
TTAACAAATCGTGAGGGGTTCAGCATTCTAGTTTCAATTATTGATTAAAA
TATTCTTACTAATCTTTAGGTCTTTGATACAAGTGATATAACGAGGCGAG
TAGAAGATTTGGAATCTCAACTTCAGGTTAGAATATTTAACCGTCGAATG
TCATGGATCGTATTGAAACAGCAGGGGCCGCGGCTCCACTTTGAAAGTAA
TTGGGTCGTGATATACTGACTAAGGAGGCGCCACCATGAACAAAAAAAAA
TTTAATTGTAAAAAGGTGAAAATGAAAAAAACCCGCGGAAAAAGTTTGTT
ACGGTGAAAGGTTTCAGGCTGTAAAATAGAGTTTTTATAACTAGACTCTT
ATGCGTCAGAATTCGGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027208XLOC_027208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043519-exon-sc0004311-1575043694:6466..6673TCONS_00043519-exon-sc0004311-1575043694:6466..6673Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1575043694:5924..5984TCONS_00043519-exon-sc0004311-1575043694:5924..5984Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1575043694:5643..5708TCONS_00043519-exon-sc0004311-1575043694:5643..5708Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1575043694:5278..5436TCONS_00043519-exon-sc0004311-1575043694:5278..5436Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1575043694:3303..3604TCONS_00043519-exon-sc0004311-1575043694:3303..3604Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1510915933:6466..6673TCONS_00043519-exon-sc0004311-1510915933:6466..6673Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1510915933:5924..5984TCONS_00043519-exon-sc0004311-1510915933:5924..5984Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1510915933:5643..5708TCONS_00043519-exon-sc0004311-1510915933:5643..5708Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1510915933:5278..5436TCONS_00043519-exon-sc0004311-1510915933:5278..5436Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1510915933:3303..3604TCONS_00043519-exon-sc0004311-1510915933:3303..3604Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1491911889:6466..6673TCONS_00043519-exon-sc0004311-1491911889:6466..6673Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1491911889:5924..5984TCONS_00043519-exon-sc0004311-1491911889:5924..5984Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1491911889:5643..5708TCONS_00043519-exon-sc0004311-1491911889:5643..5708Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1491911889:5278..5436TCONS_00043519-exon-sc0004311-1491911889:5278..5436Clytia hemisphaericaexon
TCONS_00043519-exon-sc0004311-1491911889:3303..3604TCONS_00043519-exon-sc0004311-1491911889:3303..3604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004311supercontigsc0004311:3303..6673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.59821	3.90563	1.23666	1.25435	4.53911	3.21819	4.02511	3.54925	1.86252	2.38185	0	1.66355	0	0.848897	2.73044	2.71124	3.22773	4.42256	0.0853794	0.093947	2.11802	2.00997	6.05552	4.71557	2.7109	2.18485	1.32723	2.06612	3.08983	3.8804
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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