TCONS_00043509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043509
Unique NameTCONS_00043509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043509 ID=TCONS_00043509|Name=TCONS_00043509|organism=Clytia hemisphaerica|type=transcript|length=440bp
cgACGCTTTATGCTTCTATAATCAACCATCAATTAATTACAATATTTCCC
TAGTTTTCCTTCATTAATAGATATTTTTTTATCTAGGTATTTGGTCGGAA
TTTCATCTTGTTCGTTTTATTGATGCCCGAGAAGAGGTTCCATCAAGACT
CGGTGGTCTTCGTATTATTCATTGTCTGGTCCTTCATCGAAATCATAAGG
TATCCGTTTTACTTGCTTGGTTTATATCGATACAACAATAAAGTGATGAC
TTGGTTGAGATATAATATCTGGATTCCTCTCTATCCCACTGGATTCACGT
CGGAAGCAATCATCATGTATAGATCAATACCATTTTCCCTTGAGAATAAA
AGGATGGAATACAATATGCCGAATGCATTGAATTTTCAATTCTCATTACG
TGGTTTCACCATCTTATATTTGGTCTGCTATATACCATGT
Run BLAST on NCBI

protein sequence of TCONS_00043509-protein

>TCONS_00043509-protein ID=TCONS_00043509-protein|Name=TCONS_00043509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MPEKRFHQDSVVFVLFIVWSFIEIIRYPFYLLGLYRYNNKVMTWLRYNIW
IPLYPTGFTSEAIIMYRSIPFSLENKRMEYNMPNALNFQFSLRGFTILYL
VCYIPC
Run BLAST on NCBI

transcript from alignment at sc0004303:151..1980-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043509 ID=TCONS_00043509|Name=TCONS_00043509|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at sc0004303:151..1980- (Clytia hemisphaerica)
CGACGCTTTATGCTTCTATAATCAACCATCAATTAATTACAATATTTCCC
TAGTTTTCCTTCATTAATAGATATTTTTTTATCTAGGTATTTGGTCGGAA
TTTCATCTTGTTCGTTTTATTGATGCCCGAGAAGAGGTTCCATCAAGACT
CGGTGGTCTTCGTATTATTCATTGTCTGGTCCTTCATCGAAATCATAAGG
TATCTGTTTTCTTTTTATCACTTTTGATTATGATACCCTTAGGGTTTTAG
CCTAGAAATCTATTTTAGATTAGCTTAGAAGCTAGATTGATTCAGCCACT
TGGTATAATTTAATTTATAGAAGTGTATTTCTCAGGTCTATTGACCTTTA
TGAAACAATCTTACATCTTTTTGGTATAATGTGATGTTTAGTCGTGACAA
TATTCCAAAGCAAACTTTAAAATCCGTAGATGTAAAAGTATCTTTAAAGC
GCCGAAAACGCCGTTTGTCTTAGCCTTATTTATACGGGCTTAGTTAACAA
GGCTTCTTGAGTTTATCTTATCTAACCAAATAAATCTAACTTGAAAATTC
TACTTGAGCTCAATAGGCTTGAACGTCAAATAAAGAAAGGAAAACAGAAC
GGACACTTTGCTACCTAACCATTACCTAACTTTTTGCTTTTTTGACGTTG
CGACTTTTTCAACAAAAAATCCCACCCGGTAAATCATTAAAAAAAGGAAA
ATACAGTGCTTTCCTCGTGAAAGATTTTTGAGTGCAATTCGTTTTTCGAT
CGATTCTAGGTATCCGTTTTACTTGCTTGGTTTATATCGATACAACAATA
AAGTGATGACTTGGTTGAGATATAATATCTGGATTCCTCTCTATCCCACT
GGATTCACGTCGGAAGGTACGTGGCTCACTATAACTAGACAGATTTCAAA
TTTTTGCCCTTTATCATTTCAAATAGGGGGTCAATAATTTTATCATAAAA
ACTGCTTGCACTTAAAGGTTTTGTTTTTAAATAAGAGTGATATTGTTTGC
TTACTCATCAATTTTAATTTACAAGCTTCTTTACATGGAATTGACACGGA
TGTGGAGCAATATGGTCAGAAAGAGGAAGAGAAAAGCACAATATAACAAT
AGGCAGACACTGTCCTGATATGAAATATGTGTCTGATATGAAACGGGAAC
ACTTATGTAAAAACAAAACCTTTAATATGTGAATAAATTATTTTCTTCTT
TTGACGCCTCAAATTATCCTTAGGAATACAAAAATGATCGGGGAGTCNAT
GTGAATAAATTATTTTCTTCTTTTGACGCCTCAAATTATCCTTAGGAATA
CAAAAATGATCGGGGAGTCAATGACAGCCCTGTGTTACTGACGGGGTGGG
ACCCAGCCCCACTGGAAAATTTGAACAAAATTTTGTCCCCGCTGGGAAAA
ACCCTACAATTTCAGCACCACTGGGAAATTGACTTTCATTTCAACCCATT
TAAAATTCGATATAAAAAATTGTACTCTGAAATTATCCCTACTGGAGTTG
GGAGCAACAGAATTTCTACCCCCAGGGTTTTTTATAAAAATTGTCACCCC
CACTGTGGGAAAAACTTCCACCAGGGCTTTGACTTAGGGCTGTCAAATGG
TGTTTATTCTTGTCAAGCAGCCAGTATATCGGCTAAAACGACCAACCAAC
TAACTGCTAGAAATGAAAGTTTACAATTGATCCTCTTCTGTTCTAGCAAT
CATCATGTATAGATCAATACCATTTTCCCTTGAGAATAAAAGGATGGAAT
ACAATATGCCGAATGCATTGAATTTTCAATTCTCATTACGTGGTTTCACC
ATCTTATATTTGGTCTGCTATATACCATGT

Coding sequence (CDS) from alignment at sc0004303:151..1980-

>TCONS_00043509 ID=TCONS_00043509|Name=TCONS_00043509|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0004303:151..1980- (Clytia hemisphaerica)
CAATCATCATGTATAGATCAATACCATTTTCCCTTGAGAATAAAAGGATG
GAATACAATATGCCGAATGCATTGAATTTTCAATTCTCATTACGTGGTTT
CACCATCTTATATTTGGTCTGCTATATACCATGTGTATCCGTTTTACTTG
CTTGGTTTATATCGATACAACAATAAAGTGATGACTTGGTTGAGATATAA
TATCTGGATTCCTCTCTATCCCACTGGATTCACGTCGGAAGATGCCCGAG
AAGAGGTTCCATCAAGACTCGGTGGTCTTCGTATTATTCATTGTCTGGTC
CTTCATCGAAATCATAAGCAATCATCATGTATAGATCAATACCATTTTCC
CTTGAGAATAAAAGGATGGAATACAATATGCCGAATGCATTGAATTTTCA
ATTCTCATTACGTGGTTTCACCATCTTATATTTGGTCTGCTATATACCAT
GTGTATCCGTTTTACTTGCTTGGTTTATATCGATACAACAATAAAGTGAT
GACTTGGTTGAGATATAATATCTGGATTCCTCTCTATCCCACTGGATTCA
CGTCGGAAGATGCCCGAGAAGAGGTTCCATCAAGACTCGGTGGTCTTCGT
ATTATTCATTGTCTGGTCCTTCATCGAAATCATAAGCAATCATCATGTAT
AGATCAATACCATTTTCCCTTGAGAATAAAAGGATGGAATACAATATGCC
GAATGCATTGAATTTTCAATTCTCATTACGTGGTTTCACCATCTTATATT
TGGTCTGCTATATACCATGTGTATCCGTTTTACTTGCTTGGTTTATATCG
ATACAACAATAAAGTGATGACTTGGTTGAGATATAATATCTGGATTCCTC
TCTATCCCACTGGATTCACGTCGGAAGATGCCCGAGAAGAGGTTCCATCA
AGACTCGGTGGTCTTCGTATTATTCATTGTCTGGTCCTTCATCGAAATCA
TAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027199XLOC_027199Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043509-proteinTCONS_00043509-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043509-exon-sc0004303-1575043694:1782..1980TCONS_00043509-exon-sc0004303-1575043694:1782..1980Clytia hemisphaericaexon
TCONS_00043509-exon-sc0004303-1575043694:1115..1221TCONS_00043509-exon-sc0004303-1575043694:1115..1221Clytia hemisphaericaexon
TCONS_00043509-exon-sc0004303-1575043694:151..284TCONS_00043509-exon-sc0004303-1575043694:151..284Clytia hemisphaericaexon
TCONS_00043509-exon-sc0004303-1510915933:1782..1980TCONS_00043509-exon-sc0004303-1510915933:1782..1980Clytia hemisphaericaexon
TCONS_00043509-exon-sc0004303-1510915933:1115..1221TCONS_00043509-exon-sc0004303-1510915933:1115..1221Clytia hemisphaericaexon
TCONS_00043509-exon-sc0004303-1510915933:151..284TCONS_00043509-exon-sc0004303-1510915933:151..284Clytia hemisphaericaexon
TCONS_00043509-exon-sc0004303-1491911889:1782..1980TCONS_00043509-exon-sc0004303-1491911889:1782..1980Clytia hemisphaericaexon
TCONS_00043509-exon-sc0004303-1491911889:1115..1221TCONS_00043509-exon-sc0004303-1491911889:1115..1221Clytia hemisphaericaexon
TCONS_00043509-exon-sc0004303-1491911889:151..284TCONS_00043509-exon-sc0004303-1491911889:151..284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004303supercontigsc0004303:151..1980 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.7128	34.5168	13.216	11.8272	22.7827	22.9132	23.2998	22.7372	15.9239	19.0091	11.67	10.0757	8.89684	7.6945	16.1173	22.5135	12.501	17.6721	3.42851	3.92938	9.42815	11.7336	33.2821	26.1807	9.39905	12.5091	9.2661	8.99003	23.6947	27.7168
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007482Tyr_Pase-like_PTPLA
Blast
[Close]
BLAST of TCONS_00043509 vs. Swiss-Prot (Human)
Match: HACD3 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 OS=Homo sapiens GN=HACD3 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.200e-22
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 3 
Query:   87 VFGRNFILFVLLMPEKRFHQDSVVFVLFIVWSFIEIIRYPFYLLGLYRYNNKVMTWLRYNIWIPLYPTGFTSEAIIMYRSIPFSLENKRMEYNMPNALNFQFSLRGFTILYLV 425
            + GRNFILF++    +     +VVF +F +WS IEI RY FY+L     + KV+TWLRY +WIPLYP G  +EA+ + +SIP   E  R  + +P  +  +     F  +YL+
Sbjct:  221 LLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEIFRYSFYMLTCIDMDWKVLTWLRYTLWIPLYPLGCLAEAVSVIQSIPIFNETGRFSFTLPYPVKIKVRFSFFLQIYLI 333
The following BLAST results are available for this feature:
BLAST of TCONS_00043509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HACD39.200e-2240.71Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
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