TCONS_00043497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043497
Unique NameTCONS_00043497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043497 ID=TCONS_00043497|Name=TCONS_00043497|organism=Clytia hemisphaerica|type=transcript|length=837bp
gaaaatttgagcCTGACAAAGCTTTTTCCTGGCCTTGTGATGGAAATGTT
TTGCCTGTAATTAAGCAGTTAAATTTCAATGAGACCATTCCACCCAGAAA
AAGCTATTTCACACTGTAGCTGTGAACCTCAGAACCTTTCACTTATAGTC
AACTCTATGAAGGACAACGAAGAAAATGAGACAAATGTGATCTTCGGTTT
ATGGAATACTATTACCTAATAACAAGcccaaaatattacaaaagacatga
ctttaaaaatacaatactTGTCGACTTACAAGGTAGATATTAAAATGTAC
TAGAATAAAATATCTGTAACTTTCGAAGCAATCactatcattattttttt
catttttcgagtaaaaacttttctttgtttATACCAGTAAACTTACACGT
GTAAAAAATTTCCTCTTAAGGATTAAATTAGTATAAAAAGAATTAAACAC
ACCAGTGCTCAAGGCTAATTAAATTAAAGTTGGGTACCCAGCAAATAAGA
TATTTCATTGAACGATCAAGAGTAAAAAAGAGTCAGAAAAAACGAAAGTA
TTTAATTACTTTCCATCTCGATAAATAACAACATTATCCTTATCATCCAC
CGGGATATCTATAACTGCCACAAATTTGTTTGTGATAATGAACTTTGCCA
ATTCCATGGCCATTTCCCGGACGGTGCTTTTGATAGGATTCATACTCGTA
TAACCTACCCGCTTTGCCGTATTTTGAAGCGTCAGTTTGTTCATTGTGAA
CACCTTCAAATGCCTAAGGAACACCTTACTGGTTTTGAACTTGTCCTCGT
CCGTCAATTCTGTAGAAAAAAACAGACATCAGACTAG
Run BLAST on NCBI

transcript from alignment at sc0004290:6668..7504

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043497 ID=TCONS_00043497|Name=TCONS_00043497|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at sc0004290:6668..7504 (Clytia hemisphaerica)
CTAGTCTGATGTCTGTTTTTTTCTACAGAATTGACGGACGAGGACAAGTT
CAAAACCAGTAAGGTGTTCCTTAGGCATTTGAAGGTGTTCACAATGAACA
AACTGACGCTTCAAAATACGGCAAAGCGGGTAGGTTATACGAGTATGAAT
CCTATCAAAAGCACCGTCCGGGAAATGGCCATGGAATTGGCAAAGTTCAT
TATCACAAACAAATTTGTGGCAGTTATAGATATCCCGGTGGATGATAAGG
ATAATGTTGTTATTTATCGAGATGGAAAGTAATTAAATACTTTCGTTTTT
TCTGACTCTTTTTTACTCTTGATCGTTCAATGAAATATCTTATTTGCTGG
GTACCCAACTTTAATTTAATTAGCCTTGAGCACTGGTGTGTTTAATTCTT
TTTATACTAATTTAATCCTTAAGAGGAAATTTTTTACACGTGTAAGTTTA
CTGGTATaaacaaagaaaagtttttactcgaaaaatgaaaaaaataatga
tagtGATTGCTTCGAAAGTTACAGATATTTTATTCTAGTACATTTTAATA
TCTACCTTGTAAGTCGACAagtattgtatttttaaagtcatgtcttttgt
aatattttgggCTTGTTATTAGGTAATAGTATTCCATAAACCGAAGATCA
CATTTGTCTCATTTTCTTCGTTGTCCTTCATAGAGTTGACTATAAGTGAA
AGGTTCTGAGGTTCACAGCTACAGTGTGAAATAGCTTTTTCTGGGTGGAA
TGGTCTCATTGAAATTTAACTGCTTAATTACAGGCAAAACATTTCCATCA
CAAGGCCAGGAAAAAGCTTTGTCAGgctcaaattttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027190XLOC_027190Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043497-exon-sc0004290-1491911889:6668..7504TCONS_00043497-exon-sc0004290-1491911889:6668..7504Clytia hemisphaericaexon
TCONS_00043497-exon-sc0004290-1510915933:6668..7504TCONS_00043497-exon-sc0004290-1510915933:6668..7504Clytia hemisphaericaexon
TCONS_00043497-exon-sc0004290-1575043694:6668..7504TCONS_00043497-exon-sc0004290-1575043694:6668..7504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004290supercontigsc0004290:6668..7504 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.621425	0.936526	0.127929	0	0.152369	0.301009	0.508417	0.475974	0.380846	0.23587	0.343411	0.150497	0.150287	0.273131	0.0320787	0.0344254	1.52673	0.825894	0.240214	0	0.983175	0.879191	0.259096	0.235556	1.4557	1.35331	0.309854	0	0.125406	0.319423
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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