TCONS_00043496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043496
Unique NameTCONS_00043496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043496 ID=TCONS_00043496|Name=TCONS_00043496|organism=Clytia hemisphaerica|type=transcript|length=862bp
CACAAATTTTCGGTTAtttaattctggtctgtaaattaaatGGCTACCCC
AATAAGTAGCCCAATTGGGGCTACCTTACCTTTTAGGAATACCAATGATT
CTTCTTGATTATTTGGTTTAATCTTATTCAGACCATTCATTTCATCTTTT
AGGGAAGAGTTTGTCTTGTCACATTTGATTAGAACCTTGTCCTTGGCCTC
TGAGATGAATGCATCCACAAATCAAACAAACGAATTACTAAGCTATGTTG
GTGAGCTGATAAAACTAGAATCTGTGGACGTGAAAAGGGAATGGCCAACA
AGTTCTGCCAGTGCATCGTCAGTTTTGAAACAACTTGGTCTGCTGTCTGC
TCCCACACACCACAAGATATGTTTCAGCAAAGATCATCCTCAATACTGGT
ATGCATGTGATGACAAAACATCCTGCCCTGATTGTGACAGGCTTCCTGAG
ATCGACCGATATTATTTGTCTTTGGgggacaaaatgaaaaagtggTTTTC
TTCAGTTTCAATGTCATCATTATTACTGGGACATTGGAAATACCGGGAAC
AATGGCTAGGCAAAAGAGGACCAACTTGGCCAATGAGTGAGATTTGGCAT
GGCTCAAAATTCAAAGATCTACAATGGTTTTGGGATCCTGAAGCTACCTG
GCCACTGCCCCATAAGTGTCGAGAATGTCGCAGATATAATGATTTGGTAT
CTTTGGCCATTCCAAATGATCAAACACGTTTTGAATTCACTTGCAAACAC
TGCAACAATAAAGAGTTTATTGATGTAAATTTTGTTCAAGGTGACCCAAG
GAATATTGGTCTAATTGGACATTGGGATGGCTGGCAACCTAAATTTGGAA
GGGGAATCTCGT
Run BLAST on NCBI

protein sequence of TCONS_00043496-protein

>TCONS_00043496-protein ID=TCONS_00043496-protein|Name=TCONS_00043496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MNASTNQTNELLSYVGELIKLESVDVKREWPTSSASASSVLKQLGLLSAP
THHKICFSKDHPQYWYACDDKTSCPDCDRLPEIDRYYLSLGDKMKKWFSS
VSMSSLLLGHWKYREQWLGKRGPTWPMSEIWHGSKFKDLQWFWDPEATWP
LPHKCRECRRYNDLVSLAIPNDQTRFEFTCKHCNNKEFIDVNFVQGDPRN
IGLIGHWDGWQPKFGRGIS
Run BLAST on NCBI

transcript from alignment at sc0004290:3299..4160

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043496 ID=TCONS_00043496|Name=TCONS_00043496|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at sc0004290:3299..4160 (Clytia hemisphaerica)
ACGAGATTCCCCTTCCAAATTTAGGTTGCCAGCCATCCCAATGTCCAATT
AGACCAATATTCCTTGGGTCACCTTGAACAAAATTTACATCAATAAACTC
TTTATTGTTGCAGTGTTTGCAAGTGAATTCAAAACGTGTTTGATCATTTG
GAATGGCCAAAGATACCAAATCATTATATCTGCGACATTCTCGACACTTA
TGGGGCAGTGGCCAGGTAGCTTCAGGATCCCAAAACCATTGTAGATCTTT
GAATTTTGAGCCATGCCAAATCTCACTCATTGGCCAAGTTGGTCCTCTTT
TGCCTAGCCATTGTTCCCGGTATTTCCAATGTCCCAGTAATAATGATGAC
ATTGAAACTGAAGAAAAccactttttcattttgtcccCCAAAGACAAATA
ATATCGGTCGATCTCAGGAAGCCTGTCACAATCAGGGCAGGATGTTTTGT
CATCACATGCATACCAGTATTGAGGATGATCTTTGCTGAAACATATCTTG
TGGTGTGTGGGAGCAGACAGCAGACCAAGTTGTTTCAAAACTGACGATGC
ACTGGCAGAACTTGTTGGCCATTCCCTTTTCACGTCCACAGATTCTAGTT
TTATCAGCTCACCAACATAGCTTAGTAATTCGTTTGTTTGATTTGTGGAT
GCATTCATCTCAGAGGCCAAGGACAAGGTTCTAATCAAATGTGACAAGAC
AAACTCTTCCCTAAAAGATGAAATGAATGGTCTGAATAAGATTAAACCAA
ATAATCAAGAAGAATCATTGGTATTCCTAAAAGGTAAGGTAGCCCCAATT
GGGCTACTTATTGGGGTAGCCatttaatttacagaccagaattaaaTAAC
CGAAAATTTGTG

Coding sequence (CDS) from alignment at sc0004290:3299..4160

>TCONS_00043496 ID=TCONS_00043496|Name=TCONS_00043496|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at sc0004290:3299..4160 (Clytia hemisphaerica)
CGAGATTCCCCTTCCAAATTTAGGTTGCCAGCCATCCCAATGTCCAATTA
GACCAATATTCCTTGGGTCACCTTGAACAAAATTTACATCAATAAACTCT
TTATTGTTGCAGTGTTTGCAAGTGAATTCAAAACGTGTTTGATCATTTGG
AATGGCCAAAGATACCAAATCATTATATCTGCGACATTCTCGACACTTAT
GGGGCAGTGGCCAGGTAGCTTCAGGATCCCAAAACCATTGTAGATCTTTG
AATTTTGAGCCATGCCAAATCTCACTCATTGGCCAAGTTGGTCCTCTTTT
GCCTAGCCATTGTTCCCGGTATTTCCAATGTCCCAGTAATAATGATGACA
TTGAAACTGAAGAAAAccactttttcattttgtcccCCAAAGACAAATAA
TATCGGTCGATCTCAGGAAGCCTGTCACAATCAGGGCAGGATGTTTTGTC
ATCACATGCATACCAGTATTGAGGATGATCTTTGCTGAAACATATCTTGT
GGTGTGTGGGAGCAGACAGCAGACCAAGTTGTTTCAAAACTGACGATGCA
CTGGCAGAACTTGTTGGCCATTCCCTTTTCACGTCCACAGATTCTAGTTT
TATCAGCTCACCAACATAGCTTAGTAATTCGTTTGTTTGATTTGTGGATG
CATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027189XLOC_027189Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043496-proteinTCONS_00043496-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043496-exon-sc0004290-1491911889:3299..4160TCONS_00043496-exon-sc0004290-1491911889:3299..4160Clytia hemisphaericaexon
TCONS_00043496-exon-sc0004290-1510915933:3299..4160TCONS_00043496-exon-sc0004290-1510915933:3299..4160Clytia hemisphaericaexon
TCONS_00043496-exon-sc0004290-1575043694:3299..4160TCONS_00043496-exon-sc0004290-1575043694:3299..4160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004290supercontigsc0004290:3299..4160 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.227825	0.192281	0	0	2.92629	2.52662	2.6128	2.34045	1.5731	2.42607	1.02108	0.734751	1.04019	1.052	0.937371	0.642642	1.59769	0.820965	0.55291	0.818152	0.225665	0.276106	0.486251	0.633994	3.97497	3.19164	0.179607	0.213544	0.304881	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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