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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043496 ID=TCONS_00043496|Name=TCONS_00043496|organism=Clytia hemisphaerica|type=transcript|length=862bp
CACAAATTTTCGGTTAtttaattctggtctgtaaattaaatGGCTACCCC
AATAAGTAGCCCAATTGGGGCTACCTTACCTTTTAGGAATACCAATGATT
CTTCTTGATTATTTGGTTTAATCTTATTCAGACCATTCATTTCATCTTTT
AGGGAAGAGTTTGTCTTGTCACATTTGATTAGAACCTTGTCCTTGGCCTC
TGAGATGAATGCATCCACAAATCAAACAAACGAATTACTAAGCTATGTTG
GTGAGCTGATAAAACTAGAATCTGTGGACGTGAAAAGGGAATGGCCAACA
AGTTCTGCCAGTGCATCGTCAGTTTTGAAACAACTTGGTCTGCTGTCTGC
TCCCACACACCACAAGATATGTTTCAGCAAAGATCATCCTCAATACTGGT
ATGCATGTGATGACAAAACATCCTGCCCTGATTGTGACAGGCTTCCTGAG
ATCGACCGATATTATTTGTCTTTGGgggacaaaatgaaaaagtggTTTTC
TTCAGTTTCAATGTCATCATTATTACTGGGACATTGGAAATACCGGGAAC
AATGGCTAGGCAAAAGAGGACCAACTTGGCCAATGAGTGAGATTTGGCAT
GGCTCAAAATTCAAAGATCTACAATGGTTTTGGGATCCTGAAGCTACCTG
GCCACTGCCCCATAAGTGTCGAGAATGTCGCAGATATAATGATTTGGTAT
CTTTGGCCATTCCAAATGATCAAACACGTTTTGAATTCACTTGCAAACAC
TGCAACAATAAAGAGTTTATTGATGTAAATTTTGTTCAAGGTGACCCAAG
GAATATTGGTCTAATTGGACATTGGGATGGCTGGCAACCTAAATTTGGAA
GGGGAATCTCGT Run BLAST on NCBI protein sequence of TCONS_00043496-protein >TCONS_00043496-protein ID=TCONS_00043496-protein|Name=TCONS_00043496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MNASTNQTNELLSYVGELIKLESVDVKREWPTSSASASSVLKQLGLLSAP
THHKICFSKDHPQYWYACDDKTSCPDCDRLPEIDRYYLSLGDKMKKWFSS
VSMSSLLLGHWKYREQWLGKRGPTWPMSEIWHGSKFKDLQWFWDPEATWP
LPHKCRECRRYNDLVSLAIPNDQTRFEFTCKHCNNKEFIDVNFVQGDPRN
IGLIGHWDGWQPKFGRGIS Run BLAST on NCBI transcript from alignment at sc0004290:3299..4160 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043496 ID=TCONS_00043496|Name=TCONS_00043496|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at sc0004290:3299..4160 (Clytia hemisphaerica)
ACGAGATTCCCCTTCCAAATTTAGGTTGCCAGCCATCCCAATGTCCAATT
AGACCAATATTCCTTGGGTCACCTTGAACAAAATTTACATCAATAAACTC
TTTATTGTTGCAGTGTTTGCAAGTGAATTCAAAACGTGTTTGATCATTTG
GAATGGCCAAAGATACCAAATCATTATATCTGCGACATTCTCGACACTTA
TGGGGCAGTGGCCAGGTAGCTTCAGGATCCCAAAACCATTGTAGATCTTT
GAATTTTGAGCCATGCCAAATCTCACTCATTGGCCAAGTTGGTCCTCTTT
TGCCTAGCCATTGTTCCCGGTATTTCCAATGTCCCAGTAATAATGATGAC
ATTGAAACTGAAGAAAAccactttttcattttgtcccCCAAAGACAAATA
ATATCGGTCGATCTCAGGAAGCCTGTCACAATCAGGGCAGGATGTTTTGT
CATCACATGCATACCAGTATTGAGGATGATCTTTGCTGAAACATATCTTG
TGGTGTGTGGGAGCAGACAGCAGACCAAGTTGTTTCAAAACTGACGATGC
ACTGGCAGAACTTGTTGGCCATTCCCTTTTCACGTCCACAGATTCTAGTT
TTATCAGCTCACCAACATAGCTTAGTAATTCGTTTGTTTGATTTGTGGAT
GCATTCATCTCAGAGGCCAAGGACAAGGTTCTAATCAAATGTGACAAGAC
AAACTCTTCCCTAAAAGATGAAATGAATGGTCTGAATAAGATTAAACCAA
ATAATCAAGAAGAATCATTGGTATTCCTAAAAGGTAAGGTAGCCCCAATT
GGGCTACTTATTGGGGTAGCCatttaatttacagaccagaattaaaTAAC
CGAAAATTTGTG Coding sequence (CDS) from alignment at sc0004290:3299..4160 >TCONS_00043496 ID=TCONS_00043496|Name=TCONS_00043496|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at sc0004290:3299..4160 (Clytia hemisphaerica)
CGAGATTCCCCTTCCAAATTTAGGTTGCCAGCCATCCCAATGTCCAATTA
GACCAATATTCCTTGGGTCACCTTGAACAAAATTTACATCAATAAACTCT
TTATTGTTGCAGTGTTTGCAAGTGAATTCAAAACGTGTTTGATCATTTGG
AATGGCCAAAGATACCAAATCATTATATCTGCGACATTCTCGACACTTAT
GGGGCAGTGGCCAGGTAGCTTCAGGATCCCAAAACCATTGTAGATCTTTG
AATTTTGAGCCATGCCAAATCTCACTCATTGGCCAAGTTGGTCCTCTTTT
GCCTAGCCATTGTTCCCGGTATTTCCAATGTCCCAGTAATAATGATGACA
TTGAAACTGAAGAAAAccactttttcattttgtcccCCAAAGACAAATAA
TATCGGTCGATCTCAGGAAGCCTGTCACAATCAGGGCAGGATGTTTTGTC
ATCACATGCATACCAGTATTGAGGATGATCTTTGCTGAAACATATCTTGT
GGTGTGTGGGAGCAGACAGCAGACCAAGTTGTTTCAAAACTGACGATGCA
CTGGCAGAACTTGTTGGCCATTCCCTTTTCACGTCCACAGATTCTAGTTT
TATCAGCTCACCAACATAGCTTAGTAATTCGTTTGTTTGATTTGTGGATG
CATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043496-exon-sc0004290-1491911889:3299..4160 | TCONS_00043496-exon-sc0004290-1491911889:3299..4160 | Clytia hemisphaerica | exon |
| TCONS_00043496-exon-sc0004290-1510915933:3299..4160 | TCONS_00043496-exon-sc0004290-1510915933:3299..4160 | Clytia hemisphaerica | exon |
| TCONS_00043496-exon-sc0004290-1575043694:3299..4160 | TCONS_00043496-exon-sc0004290-1575043694:3299..4160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004290 | supercontig | sc0004290:3299..4160 . |
Blast
The following BLAST results are available for this feature:
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