TCONS_00043494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043494
Unique NameTCONS_00043494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043494 ID=TCONS_00043494|Name=TCONS_00043494|organism=Clytia hemisphaerica|type=transcript|length=1186bp
tgaattttcaCTGCTATTATTTTTCGCGGACTTTTTTTAATTACGTCATA
CCCGGAAAAACCTTTACGCATGCGTAACATAGTGAATGTAAACaacattg
taattttttttgaatgttcAGAATTTCAAACATTTATTTCTTGGTTTGTT
GGTTTTGGTTCAGAATGCCGGTAAAATCTGTCCAACTTTCCAAGAAGAAA
AACATCTGGATTTGAAtggtttttaagaaaatttagcAGTGGAAATAGGC
GAAAGAAAGATTTATTTTGCTAAAAGATATTCTCTGCTTGGACTGATTGA
GTGAAATGAACTTGAGCAGGTTTGCAGCAACTTTGCAACGCAGAATTTTA
TCAAAGCATGAATTAGAATCACATTTCATTATCTGCTCACAGTGTAGAAA
TCTCAGTAGAAAAACTCCAGCTGCATTTCAACTTGCCTCTTCTCAAGAGG
ATTTCATTGATTGCACTAAACCTGCACGTAAGGTGAAAGTTGGAGTAGTA
TTTGATATCGATGGAGTGTTGGTTAGGGGTCGGAATGTTATACCCACTGC
AAAGGAAGCCATTCATAGACTAGAGGACAATAATGTTCCATATATATATT
TAACAAATGGGGGTTGTGAAACAGAGGAACAGAAAGCTGAAAAGCTGAAA
GAAAGACTCGGTATTGAGgtGGACCCTGATCAAGTGGTATTATCGCATTC
ACCGCTCAGGATATTGGACATTCTACATCATAAACATGTCATGGTTTCTG
GACAAGGACCTGTCTCGGAAATTGCACAAATGTGTGGTTTTTCCAAAGTG
TCGCATGTGAATCATATTGATGGATATTTTCCAGAGCTTGATGTCAATGA
TCGAAGGAAACAAGAACGAATGGTAAGTAGCTACCCAAAGATGAgacatt
tttaacaaaatcagGAATTTTCATTTCCACTGAGTGAGACTTgtgcattg
ttttttttttggtttccgCTGTCTTCTAGAATTATATTCTTTCATTTGTT
GGCTATCAACACGTTCGCTGTCGACTACGAATATTCTTAGTAGAGGGGTC
AAAATACCCCGGTAGTACTTCAAcgagccataacttttgatacagaaatt
ttttattgcaatattaAGGCCCCCCAGGAGTCTCTGAAAAGTcaaacttt
tgatgaaatttcaagatgtcaattttccgatttctg
Run BLAST on NCBI

protein sequence of TCONS_00043494-protein

>TCONS_00043494-protein ID=TCONS_00043494-protein|Name=TCONS_00043494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MNLSRFAATLQRRILSKHELESHFIICSQCRNLSRKTPAAFQLASSQEDF
IDCTKPARKVKVGVVFDIDGVLVRGRNVIPTAKEAIHRLEDNNVPYIYLT
NGGCETEEQKAEKLKERLGIEVDPDQVVLSHSPLRILDILHHKHVMVSGQ
GPVSEIAQMCGFSKVSHVNHIDGYFPELDVNDRRKQERMVSSYPKMRHF
Run BLAST on NCBI

transcript from alignment at sc0004289:762..7615+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043494 ID=TCONS_00043494|Name=TCONS_00043494|organism=Clytia hemisphaerica|type=transcript|length=6854bp|location=Sequence derived from alignment at sc0004289:762..7615+ (Clytia hemisphaerica)
tgaattttcaCTGCTATTATTTTTCGCGGACTTTTTTTAATTACGTCATA CCCGGAAAAACCTTTACGCATGCGTAACATAGTGAATGTAAACaacattg taattttttttgaatgttcAGAATTTCAAACATTTATTTCTTGGTTTGTT GGTTTTGGTTCAGAATGCCGGTAAAATCTGTCCAACTTTCCAAGAAGAAA AACATCTGGATTTGAAtggtttttaagaaaatttagcAGTGGAAATAGGC GAAAGAAAGATTTATTTTGCTAAAAGATATTCTCTGCTTGGACTGATTGA GTGAAATGAACTTGAGCAGGTTTGCAGCAACTTTGCAACGCAGAATTTTA TCAAAGCATGAATTAGAATCACATTTCATTATCTGCTCACAGTGTAGAAA TCTCAGTAGAAAAACTCCAGCTGCATTTCAACTTGCCTCTTCTCAAGAGG ATTTCATTGATTGCACTAAACCTGCACGTAAGGTGAAAGTTGGAGTAGTA TTTGATATCGATGGAGTGTTGGTTAGGGGTCGGAATGTTATACCCACTGC AAAGGAAGCCATTCATAGACTAGAGGACAATAATGTTCCATATATATATT TAACAAATGGGGGTTGTGAAACAGAGGAACAGAAAGCTGAAAAGCTGAAA GAAAGACTCGGTATTGAGGTAAACAAAATTCTCCAAAGCTTTCTCTTATA CAACGGGCCATTCTAGAATTTGTCTATAACAGGGGAGCGGaagacacagg atttccgagggcaaaagttttcaccaaaattcgaaatttccaaggtgaga gaagaaaatgtatgaatacgcctttcccgtaattcaaagttctcagaaat ggcccggcaAAATGTGTGCTCCaacgttgtgtataaaattgcttgggagg taaaaaacgcgtttttgcctgtNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA TCTTGCGTTCCTGTGTATAAGGCCCGGGTACAAAGAAAGGCAGACGCTTG CTAATCTATCCCTATATAAAAACGTATCAGAGGGGTTGCGTGCAGCGTAC AAAAAACTTGCTTgttaatttctgtaattttggAGGTGTGTTGGAGGCGT TGGAAAATCGACATATTTTTTACGCGCGTTTGAATCTACGAAAGTTCAAT ATTTGCTTTGATATAAGTTACTATAAAATTTCTATaagtttttcttcctt ttcccTCTGCTATAAAAGATATTAATTCAAAAATCTGGAagaaaagttga attttcaCTGCTATTATTTTTCGCGGACTTTTTTTAATTACGTCATACCC GGAAAAACCTTTACGCATGCGTAACATAGTGAATGTAAACaacattgtaa ttttttttgaatgttcAGAATTTCAAACATTTATTTCTTGGTTTGTTGGT TTTGGTTCAGAATGCCGGTAAAATCTGTCCAACTTTCCAAGAAGAAAAAC ATCTGGATTTGAAtggtttttaagaaaatttagcAGTGGAAATAGGCGAA AGAAAGATTGTATTTTGCTAAAAGATATTCTCTGCTTGGACTGATTGAGT GAAATGAACTTGAGCAGGTTTGCAGCAACTTTGCAACGCAGAATTTTATC AAAGCATGAATTAGAATCACATTTCATTATCTGCTCACAGTGTAGAAATC TCAGTAGAAAAACTCCAGCTGCATTTCAACTTGCCTCTTCTCAAGAGGAT TTCATTGATTGCACTAAACCTGCACGTAAGGTGAAAGTTGGAGTAGTATT TGATATCGATGGAGTGTTGGTTAGGGGTCGGAATGTTATACCCACTGCAA AAGAAGCCATTCATAGACTAGAGGACAATAATGTTCCATATATATATTTA ACAAATGGGGGTTGTGAAACAGAGGAACAGAAAGCTGAAAAGCTGAAAGA AAGACTCGGTATTGAGGTAAACAAAATTCTCCAAAGCTTTCTCTTATACA ACGGGCCATTCTAGAATTTGTCTATAACAGGGGAGCGGaagacacaggat ttccgagggcaaaagttttcaccaaaattcgaaatttccaaggtgagaga agaaaatgtatgaatacgcctttcccgtaattcaaagttctcagaaatgg cccggcaAAATGTGTGCTCCaacgttgtgtataaaattgcttgggaggta aaaaacgcgtttttgcctgtgAGGGGTTAGGGGAAGTGGGATTtgagcct ctaacttttgacagcgatcttcttttggcaaaataatttcagggtggtat aatatcatgaatagattgaacatactaaaatttgattgaggggattttgt tcaacagaacttaagaaaagctcaaaaaaccaactttccctaagggaacg caggcaaaaacgggtttgtttacctccagacggtgtcaatcgaacgaatc gaacgccgaatcaattgaacccaatcgaacacaatcgaataattgcgatt cgattgtcgaacgcaatcgaatattacccagaatttgccgttccattgct tcgattacgtttgattgtattcgactatgttcgattgcgttcgattgatt caattgtattctaTTTTATTCATTCTAGTACGGTTACTTATGCATTCGGC CGTCCACGCTAAAAAGAGCTTTAAAGGAGTGATCAAagttaatttaatcg caatcaaacttatCGAAAATAATCATAATCGAAGATCAATCGAAGGTAAt ttacaatcaatcgaaccaattaaACATAGGTTggctatcaatcgaaccaa tcgaacgttacttgaacgcaatcgaacacaatcgaatattacccaagaat cggccgttcgattgagattcgattgcgttcggcaatcgaatcgcaatcat tcgatcgcgttcgtttgcgttcgattggttcgattgcgatttccgtttga agttgttcgattgacaccgtctggttacctccagagaccaaacggtggag agcatcaaaatattGCGTGTGcgttagttttacgaattatgGCAAAGGTg tatttccaaggcaattgaattaaaaaaggcaaaaaagagtggaatttctg atgcattttgcaaaagtacatggattttttatcagaatttccgaccaccg ctggaaaagaaaaattatttccgaggctagaataaattttaaaatgcacg tcgtccgacagagggtaacaaaaattttctggaatggcccaacgACCCTG CCTGCCAGAACAGTGTGTCTGTCCTGCCAATGCACTGGACTTNTCCGAca gggggtaacaaaaattttctggaatggcccaacgACCCTGCCTGCCAGAA CAGTGTGTCTGTCCTGCCAATGCACTAGACTTACAAAAGCACCTAATGTG AATGTCAAATGAGAAATTTTTTACAACAAAACAATCCAAACaccagactc aatttgtagaaaTTAGACTAATACAGTAATGGGCCATTCTGCGATTTTGA TcctgaaaaagatttcaaactGGTCCACCCAAAgggaaaatcacaaattt tgtgAACTGAACTTGACCCAAACATCAATGTTTGGGtcaaaagaatgttt ttctattttggccTGCTCAAACATTCGactggaaaatgtttttgaggtcT GCTCAAGATACACTGTGGGTCGTGAAATTTGTttcgtaagttggtctaat tattcctatctttaaagaagggtgtcggaattagaagagggatgttaaca ttagaccaacttatatacagtactctcgggtgcctattATTTTTGTGTca aatttcccgcctgtacgcacatagtgtcctccccccccctttataaaggg gggggattctgattttggccctttttttaaagtatgggggaaaatgaaaa atttgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNTAAGCACTTCCCTTGAATTTGCAAAGTA AAGTATTTTATAAAGTTAGTATGTGATAATTTCTGCTTGTAGATAACAGA TTAGGCCTTTTTCCTGCTTTTTCAGACacaaatgtttgatttttttaggt GGACCCTGATCAAGTGGTATTATCGCATTCACCGCTCAGGATATTGGACA TTCTACATCATAAACATGTCATGGTTTCTGGACAAGGACCTGTCTCGGAA ATTGCACAAATGTatcttttctaaaaaatttatttttgtttgggGAAACT AAATTCTTTTGTCTTTATATTATGACtgatatctttttaaaaaactttaa ccTCAGCTAAACGGTTGCCTCAAATTTCGAATTACAAATTTGCATATTTG CATATTTTCACAGACATGCTGTTATATTTCTGTCACCATGANCAAATTTG CATATTTGCATATTTTCACAGACATGCTGTTATATTTCTGTCACCATGAG TAAACTGTTTTTAATTTGATCCTATTCATTAATAATCTACAtaatttgtt tttaactttttaaagtcagttcaaaataattatttctccATAAGATCAAA TGCTGTCACAGCTTCTTGCCATTTTAATGATGACATCAGAAATATGCATG GAATTATTTATTTTAGTTTACAATAATTTTAAATATACAAAGTAAGAATA ATGAATGGATgagtgaatgaatgaatgagtgaattaatcaaaaaatgata aaaaacagGACTAATGAAATGTGCCACCATTGATTGGAtttaaattctat ttttttacAAACCAATTACCCTTAACTGTGATGAAATTTAACGAAACAGG TGTGGTTTTTCCAAAGTGTCGCATGTGAATCATATTGATGGATATTTTCC AGAGCTTGATGTCAATGATCGAAGGAAACAAGAACGAATGGTAAGTAGCT ACCCAAAGATGAgacatttttaacaaaatcagGAATTTTCATTTCCACTG AGTGAGACTTgtgcattgttttttttttggtttccgCTGTCTTCTAGAAT TATATTCTTTCATTTGTTGGCTATCAACACGTTCGCTGTCGACTACGAAT ATTCTTAGTAGAGGGGTCAAAATACCCCGGTAGTACTTCAAcgagccata acttttgatacagaaattttttattgcaatattaAGGCCCCCCAGGAGTC TCTGAAAAGTcaaacttttgatgaaatttcaagatgtcaattttccgatt tctg

Coding sequence (CDS) from alignment at sc0004289:762..7615+

>TCONS_00043494 ID=TCONS_00043494|Name=TCONS_00043494|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0004289:762..7615+ (Clytia hemisphaerica)
ATGAACTTGAGCAGGTTTGCAGCAACTTTGCAACGCAGAATTTTATCAAA
GCATGAATTAGAATCACATTTCATTATCTGCTCACAGTGTAGAAATCTCA
GTAGAAAAACTCCAGCTGCATTTCAACTTGCCTCTTCTCAAGAGGATTTC
ATTGATTGCACTAAACCTGCACGTAAGGTGAAAGTTGGAGTAGTATTTGA
TATCGATGGAGTGTTGGTTAGGGGTCGGAATGTTATACCCACTGCAAAGG
AAGCCATTCATAGACTAGAGGACAATAATGTTCCATATATATATTTAACA
AATGGGGGTTGTGAAACAGAGGAACAGAAAGCTGAAAAGCTGAAAGAAAG
ACTCGGTATTGAGgtGGACCCTGATCAAGTGGTATTATCGCATTCACCGC
TCAGGATATTGGACATTCTACATCATAAACATGTCATGGTTTCTGGACAA
GGACCTGTCTCGGAAATTGCACAAATGTGTGGTTTTTCCAAAGTGTCGCA
TGTGAATCATATTGATGGATATTTTCCAGAGCTTGATGTCAATGATCGAA
GGAAACAAGAACGAATGGTAAGTAGCTACCCAAAGATGAgacatttttaa
ATGAACTTGAGCAGGTTTGCAGCAACTTTGCAACGCAGAATTTTATCAAA
GCATGAATTAGAATCACATTTCATTATCTGCTCACAGTGTAGAAATCTCA
GTAGAAAAACTCCAGCTGCATTTCAACTTGCCTCTTCTCAAGAGGATTTC
ATTGATTGCACTAAACCTGCACGTAAGGTGAAAGTTGGAGTAGTATTTGA
TATCGATGGAGTGTTGGTTAGGGGTCGGAATGTTATACCCACTGCAAAGG
AAGCCATTCATAGACTAGAGGACAATAATGTTCCATATATATATTTAACA
AATGGGGGTTGTGAAACAGAGGAACAGAAAGCTGAAAAGCTGAAAGAAAG
ACTCGGTATTGAGgtGGACCCTGATCAAGTGGTATTATCGCATTCACCGC
TCAGGATATTGGACATTCTACATCATAAACATGTCATGGTTTCTGGACAA
GGACCTGTCTCGGAAATTGCACAAATGTGTGGTTTTTCCAAAGTGTCGCA
TGTGAATCATATTGATGGATATTTTCCAGAGCTTGATGTCAATGATCGAA
GGAAACAAGAACGAATGGTAAGTAGCTACCCAAAGATGAgacatttttaa
ATGAACTTGAGCAGGTTTGCAGCAACTTTGCAACGCAGAATTTTATCAAA
GCATGAATTAGAATCACATTTCATTATCTGCTCACAGTGTAGAAATCTCA
GTAGAAAAACTCCAGCTGCATTTCAACTTGCCTCTTCTCAAGAGGATTTC
ATTGATTGCACTAAACCTGCACGTAAGGTGAAAGTTGGAGTAGTATTTGA
TATCGATGGAGTGTTGGTTAGGGGTCGGAATGTTATACCCACTGCAAAGG
AAGCCATTCATAGACTAGAGGACAATAATGTTCCATATATATATTTAACA
AATGGGGGTTGTGAAACAGAGGAACAGAAAGCTGAAAAGCTGAAAGAAAG
ACTCGGTATTGAGgtGGACCCTGATCAAGTGGTATTATCGCATTCACCGC
TCAGGATATTGGACATTCTACATCATAAACATGTCATGGTTTCTGGACAA
GGACCTGTCTCGGAAATTGCACAAATGTGTGGTTTTTCCAAAGTGTCGCA
TGTGAATCATATTGATGGATATTTTCCAGAGCTTGATGTCAATGATCGAA
GGAAACAAGAACGAATGGTAAGTAGCTACCCAAAGATGAgacatttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027188XLOC_027188Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043494-proteinTCONS_00043494-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043494-exon-sc0004289-1491911889:762..1429TCONS_00043494-exon-sc0004289-1491911889:762..1429Clytia hemisphaericaexon
TCONS_00043494-exon-sc0004289-1510915933:762..1429TCONS_00043494-exon-sc0004289-1510915933:762..1429Clytia hemisphaericaexon
TCONS_00043494-exon-sc0004289-1575043694:762..1429TCONS_00043494-exon-sc0004289-1575043694:762..1429Clytia hemisphaericaexon
TCONS_00043494-exon-sc0004289-1491911889:6510..6622TCONS_00043494-exon-sc0004289-1491911889:6510..6622Clytia hemisphaericaexon
TCONS_00043494-exon-sc0004289-1510915933:6510..6622TCONS_00043494-exon-sc0004289-1510915933:6510..6622Clytia hemisphaericaexon
TCONS_00043494-exon-sc0004289-1575043694:6510..6622TCONS_00043494-exon-sc0004289-1575043694:6510..6622Clytia hemisphaericaexon
TCONS_00043494-exon-sc0004289-1491911889:7211..7615TCONS_00043494-exon-sc0004289-1491911889:7211..7615Clytia hemisphaericaexon
TCONS_00043494-exon-sc0004289-1510915933:7211..7615TCONS_00043494-exon-sc0004289-1510915933:7211..7615Clytia hemisphaericaexon
TCONS_00043494-exon-sc0004289-1575043694:7211..7615TCONS_00043494-exon-sc0004289-1575043694:7211..7615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004289supercontigsc0004289:762..7615 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.42392 4.35563 2.04886 1.14963 12.1446 8.51329 10.8778 12.0631 8.38227 9.04623 11.4362 11.0562 8.67078 12.568 6.57473 5.11831 13.1836 16.5666 12.2808 11.7896 20.8252 17.5066 9.18816 9.11535 30.5273 27.558 5.97011 5.74132 3.92106 6.60179
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR006357HAD-SF_hydro_IIA
Blast
BLAST of TCONS_00043494 vs. Swiss-Prot (Human)
Match: HDHD5 (Haloacid dehalogenase-like hydrolase domain-containing 5 OS=Homo sapiens GN=HDHD5 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.688e-27
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  492 GVVFDIDGVLVRGRNVIPTAKEAIHRLEDNN----VPYIYLTNGGCETEEQKAEKLKERLGIEVDPDQVVLSHSPLRILDILHHKHVMVSGQGPVSEIAQMCGFSKVSHVNHIDGYFPELDVNDRRKQERMVSSYPKMRH 899
            G + DIDGVLVRG  VIP A +A  RL ++     VP +++TN G   +  KA++L   LG EVD DQV+LSHSP+++    H K ++VSGQGPV E AQ  GF  V  V+ +   FP LD+ D    ER + + P  R+
Sbjct:   48 GFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDELRMAFPLLDMVDL---ERRLKTTPLPRN 184          
The following BLAST results are available for this feature:
BLAST of TCONS_00043494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDHD51.688e-2745.00Haloacid dehalogenase-like hydrolase domain-contai... [more]
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