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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043486 ID=TCONS_00043486|Name=TCONS_00043486|organism=Clytia hemisphaerica|type=transcript|length=1774bp
agaaacttttacCATTCCAACTTTTAAGAAAGTCTAGCCACATCTTAAGA
TCCTCTCTGGTGCTCTGATTGATATAAACCTTATAATGAAGCTTTCTGAC
CGTGCAACTTAGGGTAATCAATCTATGAAGGAAAATTCGCCCTGGAGCAA
CAACCTTACACGCAAAGCTCAATGAGCCTATCAAGCTCAAAAGCTCTCGT
TTAGAGCACTTCTTTCTGGCCAAAAAACTTTCTATCCCCCCAATTAACCT
GTGAACCTTTTCATCAGACAGTGAAGCTTCCAGCTTTACAGTATCAAGTG
TAATGCCCAAAAACTCAAGCTTCTGAGAAGGACCCTCCACTTTATGTTGT
GCTATAGGAATACCTAACCTCTGGAAAAGCTCCAAAATTATATTCAATGA
CTCGCCTTTCTTGCCTGGTAGTTCAGCCACTAGAAAGTCGTCAAGCAGGT
GACATATATAATCTACTCCATATTTCCTAGCAGTAAGCCATTCAAGTGCT
TCTGACAGCCTGTCAAACAAAGCAGGACTAGATCTACCCCCCATACTTAG
CCTGGTATCATAGTAGTATTTCTCCTTCCAAAGAATTCCAAGAAGCCTAA
AGTTCTCTGGACATATGGGAATTATCCTGAAAGCCCCTTCAATGTCGACT
TTACTTAAAAAACATCCTCGCCCCAACTGTAAAATATACTCGATTGCTCT
GTCAACTGTGACGTACTTCAATGAAAACTCTTCCTTGTTTATAAAATCAT
TAACTGATGACCCCTCTGGGTATGAAAGGTCCATAATCGTGCGAAATTTT
CCAGGTACCTTTTTGGTACAATCCCAATCGGTTGACATTGAAAATTCTCA
AAAGGGGGAGAGTCAAAAGGTCCCATTATTCTACCCTTCCTTATTTCGTC
CTGCAGGTAAGTATCCACCACTTCTGGGTTATCTCGAGCAGATTGTAGAT
TCCTCGAGACCTTAGATCTATCTGGACCATAATACCCTATATCaaaacca
aaatgaaatcctTCAGACAAAAATTCCACAAATTCTCTATCAGGATGGTT
TGCTAGCTCTTTTTCTagcaaagaaatatttacagggGAGCTCACCTTCT
GCATCTGTCACTTCAACTCTTCTGGAGCCTCTGAGCACTTTTTGATGGAG
TGATCGTGTCTATTACAATACCTACACATATGAAGAAAGGGACACTGGTT
CTTCTTATGGCATAAGCTATAATTGAACTGAGTGCAAATCTCCTTACCTT
TATAAAATGCCCTCGCCCTGTTCTTAAGGAGTGGAAAAGTGGGCGAAGAA
GTAGACTTACCAGCCCCGTTAGGGGAGCTGTAGCTTTCTTGGGAGGGCGA
TTCTTGTCTCAGGTTGAACGGACACTGCGCTGGATTGTGATACCACGACT
GACAGTGGTCGCAGTAGTTGGCAGAAGAGCTTTTCGCAATCGCCGCATGC
AAAGCTTCCGCGTCTAAGGCAGACCAGTTCAATTCCTCCCCCCTTTCACT
GTACTCAGCTGCCCTATCCCAAAAATATAAATGATAAAACCAATATGCTT
TCCCACTATATTTGCTAGCTACCATTACAATGTTAGCCATATAGTTATCA
ATGTCAACCACTCTCGTAGGAAAATCGGATGAAATGAGTTCCTTGTACTT
CATGAGAGCAATAAGCATTTGGGCAACCTCTAACGTCTGCTTCCCCAGTC
TACGTTCCTTGTTTCCATCCCCAACATTTAGCCGAATCTTGTCATCCTCA
CTCCATACACTGGCTGTCTCCTGG Run BLAST on NCBI protein sequence of TCONS_00043486-protein >TCONS_00043486-protein ID=TCONS_00043486-protein|Name=TCONS_00043486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MSTDWDCTKKVPGKFRTIMDLSYPEGSSVNDFINKEEFSLKYVTVDRAIE
YILQLGRGCFLSKVDIEGAFRIIPICPENFRLLGILWKEKYYYDTRLSMG
GRSSPALFDRLSEALEWLTARKYGVDYICHLLDDFLVAELPGKKGESLNI
ILELFQRLGIPIAQHKVEGPSQKLEFLGITLDTVKLEASLSDEKVHRLIG
GIESFLARKKCSKRELLSLIGSLSFACKVVAPGRIFLHRLITLSCTVRKL
HYKVYINQSTREDLKMWLDFLKSWNGKSF Run BLAST on NCBI transcript from alignment at sc0004284:5569..7342 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043486 ID=TCONS_00043486|Name=TCONS_00043486|organism=Clytia hemisphaerica|type=transcript|length=1774bp|location=Sequence derived from alignment at sc0004284:5569..7342 (Clytia hemisphaerica)
CCAGGAGACAGCCAGTGTATGGAGTGAGGATGACAAGATTCGGCTAAATG
TTGGGGATGGAAACAAGGAACGTAGACTGGGGAAGCAGACGTTAGAGGTT
GCCCAAATGCTTATTGCTCTCATGAAGTACAAGGAACTCATTTCATCCGA
TTTTCCTACGAGAGTGGTTGACATTGATAACTATATGGCTAACATTGTAA
TGGTAGCTAGCAAATATAGTGGGAAAGCATATTGGTTTTATCATTTATAT
TTTTGGGATAGGGCAGCTGAGTACAGTGAAAGGGGGGAGGAATTGAACTG
GTCTGCCTTAGACGCGGAAGCTTTGCATGCGGCGATTGCGAAAAGCTCTT
CTGCCAACTACTGCGACCACTGTCAGTCGTGGTATCACAATCCAGCGCAG
TGTCCGTTCAACCTGAGACAAGAATCGCCCTCCCAAGAAAGCTACAGCTC
CCCTAACGGGGCTGGTAAGTCTACTTCTTCGCCCACTTTTCCACTCCTTA
AGAACAGGGCGAGGGCATTTTATAAAGGTAAGGAGATTTGCACTCAGTTC
AATTATAGCTTATGCCATAAGAAGAACCAGTGTCCCTTTCTTCATATGTG
TAGGTATTGTAATAGACACGATCACTCCATCAAAAAGTGCTCAGAGGCTC
CAGAAGAGTTGAAGTGACAGATGCAGAAGGTGAGCTCccctgtaaatatt
tctttgctAGAAAAAGAGCTAGCAAACCATCCTGATAGAGAATTTGTGGA
ATTTTTGTCTGAaggatttcattttggttttGATATAGGGTATTATGGTC
CAGATAGATCTAAGGTCTCGAGGAATCTACAATCTGCTCGAGATAACCCA
GAAGTGGTGGATACTTACCTGCAGGACGAAATAAGGAAGGGTAGAATAAT
GGGACCTTTTGACTCTCCCCCTTTTGAGAATTTTCAATGTCAACCGATTG
GGATTGTACCAAAAAGGTACCTGGAAAATTTCGCACGATTATGGACCTTT
CATACCCAGAGGGGTCATCAGTTAATGATTTTATAAACAAGGAAGAGTTT
TCATTGAAGTACGTCACAGTTGACAGAGCAATCGAGTATATTTTACAGTT
GGGGCGAGGATGTTTTTTAAGTAAAGTCGACATTGAAGGGGCTTTCAGGA
TAATTCCCATATGTCCAGAGAACTTTAGGCTTCTTGGAATTCTTTGGAAG
GAGAAATACTACTATGATACCAGGCTAAGTATGGGGGGTAGATCTAGTCC
TGCTTTGTTTGACAGGCTGTCAGAAGCACTTGAATGGCTTACTGCTAGGA
AATATGGAGTAGATTATATATGTCACCTGCTTGACGACTTTCTAGTGGCT
GAACTACCAGGCAAGAAAGGCGAGTCATTGAATATAATTTTGGAGCTTTT
CCAGAGGTTAGGTATTCCTATAGCACAACATAAAGTGGAGGGTCCTTCTC
AGAAGCTTGAGTTTTTGGGCATTACACTTGATACTGTAAAGCTGGAAGCT
TCACTGTCTGATGAAAAGGTTCACAGGTTAATTGGGGGGATAGAAAGTTT
TTTGGCCAGAAAGAAGTGCTCTAAACGAGAGCTTTTGAGCTTGATAGGCT
CATTGAGCTTTGCGTGTAAGGTTGTTGCTCCAGGGCGAATTTTCCTTCAT
AGATTGATTACCCTAAGTTGCACGGTCAGAAAGCTTCATTATAAGGTTTA
TATCAATCAGAGCACCAGAGAGGATCTTAAGATGTGGCTAGACTTTCTTA
AAAGTTGGAATGgtaaaagtttct Coding sequence (CDS) from alignment at sc0004284:5569..7342 >TCONS_00043486 ID=TCONS_00043486|Name=TCONS_00043486|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at sc0004284:5569..7342 (Clytia hemisphaerica)
ATGTCAACCGATTGGGATTGTACCAAAAAGGTACCTGGAAAATTTCGCAC
GATTATGGACCTTTCATACCCAGAGGGGTCATCAGTTAATGATTTTATAA
ACAAGGAAGAGTTTTCATTGAAGTACGTCACAGTTGACAGAGCAATCGAG
TATATTTTACAGTTGGGGCGAGGATGTTTTTTAAGTAAAGTCGACATTGA
AGGGGCTTTCAGGATAATTCCCATATGTCCAGAGAACTTTAGGCTTCTTG
GAATTCTTTGGAAGGAGAAATACTACTATGATACCAGGCTAAGTATGGGG
GGTAGATCTAGTCCTGCTTTGTTTGACAGGCTGTCAGAAGCACTTGAATG
GCTTACTGCTAGGAAATATGGAGTAGATTATATATGTCACCTGCTTGACG
ACTTTCTAGTGGCTGAACTACCAGGCAAGAAAGGCGAGTCATTGAATATA
ATTTTGGAGCTTTTCCAGAGGTTAGGTATTCCTATAGCACAACATAAAGT
GGAGGGTCCTTCTCAGAAGCTTGAGTTTTTGGGCATTACACTTGATACTG
TAAAGCTGGAAGCTTCACTGTCTGATGAAAAGGTTCACAGGTTAATTGGG
GGGATAGAAAGTTTTTTGGCCAGAAAGAAGTGCTCTAAACGAGAGCTTTT
GAGCTTGATAGGCTCATTGAGCTTTGCGTGTAAGGTTGTTGCTCCAGGGC
GAATTTTCCTTCATAGATTGATTACCCTAAGTTGCACGGTCAGAAAGCTT
CATTATAAGGTTTATATCAATCAGAGCACCAGAGAGGATCTTAAGATGTG
GCTAGACTTTCTTAAAAGTTGGAATGgtaaaagtttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043486-exon-sc0004284-1491911889:5569..7342 | TCONS_00043486-exon-sc0004284-1491911889:5569..7342 | Clytia hemisphaerica | exon |
| TCONS_00043486-exon-sc0004284-1510915933:5569..7342 | TCONS_00043486-exon-sc0004284-1510915933:5569..7342 | Clytia hemisphaerica | exon |
| TCONS_00043486-exon-sc0004284-1575043694:5569..7342 | TCONS_00043486-exon-sc0004284-1575043694:5569..7342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004284 | supercontig | sc0004284:5569..7342 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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