|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043483 ID=TCONS_00043483|Name=TCONS_00043483|organism=Clytia hemisphaerica|type=transcript|length=804bp
aaaggccaattttttggtaaaattatcacaaaattggtcaattttggagg
aaaaattccacattttcttggaaaattgcaaaatttttcgcccttacggg
cgagaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTTGGTATTCTACTGCCTCGAATGCA
TAGAACAGTGGACCTTGCAAGAGCAAAAGAGATCTTAGTTCTCAGATAGT
TCAATGTAATTTGCATAAGTTCGTCTCTCTTTTCGGATAAGAGAGTAGCT
AAAGCCTTGATGAAGATTTGAGCCTCCCTGCCTGCGCCTCCATTTGTGGA
AAAGATGAGAGGTGTAAAAGAACCTCCATCAACTTGAATGATACGTTGGT
TATAgtgtctcttcttttctttctcattcACTTCAAAAGCACAAGTGGGA
CTCATCCTAGAGTACCGTTGGGCATAGGCATTAAATACCCTAACATCAAA
AAATGCCCGCTGGCCTCTAGTCCAGAATCCCCTTGCACTTATGTCAGCTC
TGGCACCATCTTCCTTGATTACACCCCGGTCAAGATGCTCTCCAGTGATT
GGTTCAAGCTGTGGTTCGATGGTTACATCCTTAGTGACCTCATTTAACGT
CATGGCTAGCGTGTCCCGGATCTCATTATGGCGCTGGTAAATGAACCCAC
CTTTGGGGCAAGACAAAGCATGTTCAATAGAGAACCTTTTACCACATGCA
CATATGCTAGGTAGGTGCTTTAGCTGCCAGCGGTATCTGATGGCTATCGA
attt Run BLAST on NCBI protein sequence of TCONS_00043483-protein >TCONS_00043483-protein ID=TCONS_00043483-protein|Name=TCONS_00043483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
NSIAIRYRWQLKHLPSICACGKRFSIEHALSCPKGGFIYQRHNEIRDTLA
MTLNEVTKDVTIEPQLEPITGEHLDRGVIKEDGARADISARGFWTRGQRA
FFDVRVFNAYAQRYSRMSPTCAFEVNEKEKKRHYNQRIIQVDGGSFTPLI
FSTNGGAGREAQIFIKALATLLSEKRDELMQITLNYLRTKISFALARSTV
LCIRGSRIPKXXXXXXXXXXXXXXXXXXXXXXFLARKGEKFCNFPRKCGI
FPPKLTNFVIILPKNWP Run BLAST on NCBI transcript from alignment at sc0004279:1666..2469 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043483 ID=TCONS_00043483|Name=TCONS_00043483|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at sc0004279:1666..2469 (Clytia hemisphaerica)
aaatTCGATAGCCATCAGATACCGCTGGCAGCTAAAGCACCTACCTAGCA
TATGTGCATGTGGTAAAAGGTTCTCTATTGAACATGCTTTGTCTTGCCCC
AAAGGTGGGTTCATTTACCAGCGCCATAATGAGATCCGGGACACGCTAGC
CATGACGTTAAATGAGGTCACTAAGGATGTAACCATCGAACCACAGCTTG
AACCAATCACTGGAGAGCATCTTGACCGGGGTGTAATCAAGGAAGATGGT
GCCAGAGCTGACATAAGTGCAAGGGGATTCTGGACTAGAGGCCAGCGGGC
ATTTTTTGATGTTAGGGTATTTAATGCCTATGCCCAACGGTACTCTAGGA
TGAGTCCCACTTGTGCTTTTGAAGTgaatgagaaagaaaagaagagacac
TATAACCAACGTATCATTCAAGTTGATGGAGGTTCTTTTACACCTCTCAT
CTTTTCCACAAATGGAGGCGCAGGCAGGGAGGCTCAAATCTTCATCAAGG
CTTTAGCTACTCTCTTATCCGAAAAGAGAGACGAACTTATGCAAATTACA
TTGAACTATCTGAGAACTAAGATCTCTTTTGCTCTTGCAAGGTCCACTGT
TCTATGCATTCGAGGCAGTAGAATACCAAAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttt
ctcgcccgtaagggcgaaaaattttgcaattttccaagaaaatgtggaat
ttttcctccaaaattgaccaattttgtgataattttaccaaaaaattggc
cttt Coding sequence (CDS) from alignment at sc0004279:1666..2469 >TCONS_00043483 ID=TCONS_00043483|Name=TCONS_00043483|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0004279:1666..2469 (Clytia hemisphaerica)
aatTCGATAGCCATCAGATACCGCTGGCAGCTAAAGCACCTACCTAGCAT
ATGTGCATGTGGTAAAAGGTTCTCTATTGAACATGCTTTGTCTTGCCCCA
AAGGTGGGTTCATTTACCAGCGCCATAATGAGATCCGGGACACGCTAGCC
ATGACGTTAAATGAGGTCACTAAGGATGTAACCATCGAACCACAGCTTGA
ACCAATCACTGGAGAGCATCTTGACCGGGGTGTAATCAAGGAAGATGGTG
CCAGAGCTGACATAAGTGCAAGGGGATTCTGGACTAGAGGCCAGCGGGCA
TTTTTTGATGTTAGGGTATTTAATGCCTATGCCCAACGGTACTCTAGGAT
GAGTCCCACTTGTGCTTTTGAAGTgaatgagaaagaaaagaagagacacT
ATAACCAACGTATCATTCAAGTTGATGGAGGTTCTTTTACACCTCTCATC
TTTTCCACAAATGGAGGCGCAGGCAGGGAGGCTCAAATCTTCATCAAGGC
TTTAGCTACTCTCTTATCCGAAAAGAGAGACGAACTTATGCAAATTACAT
TGAACTATCTGAGAACTAAGATCTCTTTTGCTCTTGCAAGGTCCACTGTT
CTATGCATTCGAGGCAGTAGAATACCAAAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttc
tcgcccgtaagggcgaaaaattttgcaattttccaagaaaatgtggaatt
tttcctccaaaattgaccaattttgtgataattttaccaaaaaattggcc
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043483-exon-sc0004279-1491911889:1666..2469 | TCONS_00043483-exon-sc0004279-1491911889:1666..2469 | Clytia hemisphaerica | exon |
| TCONS_00043483-exon-sc0004279-1510915933:1666..2469 | TCONS_00043483-exon-sc0004279-1510915933:1666..2469 | Clytia hemisphaerica | exon |
| TCONS_00043483-exon-sc0004279-1575043694:1666..2469 | TCONS_00043483-exon-sc0004279-1575043694:1666..2469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004279 | supercontig | sc0004279:1666..2469 . |
Blast
The following BLAST results are available for this feature:
|
