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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043482 ID=TCONS_00043482|Name=TCONS_00043482|organism=Clytia hemisphaerica|type=transcript|length=1341bp
CAAAGATAAACCTAAAGAGATAAATACAAATGGCAATTCGAATACCATTG
ATTTTTCTATTGATCAATCATCAAATATTCAACcagaaaaaatgataaaa
aatgtcctccacaaagaattagaaaatcAAGAACGTAAAGTCACGGCATC
GAAAAACAAGCTAGAGTCCGATATTATTAGGTCTACTCCTTTCAAAAGGA
AGCGAAAATTCAAAACTGTGTCAAAAAAGACTGCAATGAAAAAATCCAGG
TATAATCTCGATGATGTCAAAAAAGAGCTTTTTCAAGGCACTGATAGAAA
ACGAAAGAAAGATATGAGGGATAACCAAGAcgaatttgagaaagaaaatg
ttcgtaAATCTGATAAACTAAAAAAGGAAAGTTGGAGGAAAAATCTAGAT
GAATCAGACAAAGCAAAAGAACGAAAATCTGCTTCAAAAAGAATggacat
tttaagaaaaaatctagacgaatcagacaaagcaaaagaacgaaaatctg
cttcaaaaagaatggaaaatttaagaaaaaatctagatgaatcagacaaa
gcaaaagaacgaaaatctgcttcaaaaagaatggacattttaagaaaaaa
tctagacgaatcagacaaagcaaaataacgaaaatctgcttcaaaaagaa
tggaaattttaagaaaaaatctagaCGAATCAGACAAAGCAAAAGTTCGA
AGATCTGaccaattaaaaaagaaaaatttaagaaaaaatctagaCGAATC
AGACCAGATCAGACAAAGCAAAAGTTTGCGAAAAAGATAAAATGAGGAAA
GAAGCTCATCGGCTTCTAAATAAATCAGAAAGGAAAAAAGAGTTTGATAA
ATTACAAGGTAAAAGTATGGTTGACCCATCGATCACCCTAACTAAAGCAT
TTGAAATCGTTGAGCAAGATTTTGAGTGTGCTATAAAAGAAGGCCCAACA
AATAAATGTCATATTTGCATAAAATGGGAGTATAAAGGAAACGGTAAAAG
ATTTCTCCACAaagaatatgaaattttgaccatgtTTGAATTGTGTGATG
TGTGTAATACTGATTGCGATTCTGAAGAAATTTACTGGATTTGCAACTCA
TGTTGATAAAGCCAATAAAAAAAGAGCAACTCCCTGTACAAGCACAAGCC
AATAATCTCCATTTATCACCAAAACTTCCAGAGCTAGAGGAATTATGCCC
AATAGAGATGATGCTAGTTTCCCAAATAATTCCGTTTATGTTCATTGTAA
CAAAGCATAAAGGAGGACAGCAAGGTTTAAAAGGACAGTGTGTAATGGTA
CCAGCAAATCTTGACAAAATTCAGAAGGTTTTACCAAGAGT Run BLAST on NCBI protein sequence of TCONS_00043482-protein >TCONS_00043482-protein ID=TCONS_00043482-protein|Name=TCONS_00043482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
KDKPKEINTNGNSNTIDFSIDQSSNIQPEKMIKNVLHKELENQERKVTAS
KNKLESDIIRSTPFKRKRKFKTVSKKTAMKKSRYNLDDVKKELFQGTDRK
RKKDMRDNQDEFEKENVRKSDKLKKESWRKNLDESDKAKERKSASKRMDI
LRKNLDESDKAKERKSASKRMENLRKNLDESDKAKERKSASKRMDILRKN
LDESDKAK Run BLAST on NCBI transcript from alignment at sc0004278:3369..4709 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043482 ID=TCONS_00043482|Name=TCONS_00043482|organism=Clytia hemisphaerica|type=transcript|length=1341bp|location=Sequence derived from alignment at sc0004278:3369..4709 (Clytia hemisphaerica)
ACTCTTGGTAAAACCTTCTGAATTTTGTCAAGATTTGCTGGTACCATTAC
ACACTGTCCTTTTAAACCTTGCTGTCCTCCTTTATGCTTTGTTACAATGA
ACATAAACGGAATTATTTGGGAAACTAGCATCATCTCTATTGGGCATAAT
TCCTCTAGCTCTGGAAGTTTTGGTGATAAATGGAGATTATTGGCTTGTGC
TTGTACAGGGAGTTGCTCTTTTTTTATTGGCTTTATCAACATGAGTTGCA
AATCCAGTAAATTTCTTCAGAATCGCAATCAGTATTACACACATCACACA
ATTCAAacatggtcaaaatttcatattcttTGTGGAGAAATCTTTTACCG
TTTCCTTTATACTCCCATTTTATGCAAATATGACATTTATTTGTTGGGCC
TTCTTTTATAGCACACTCAAAATCTTGCTCAACGATTTCAAATGCTTTAG
TTAGGGTGATCGATGGGTCAACCATACTTTTACCTTGTAATTTATCAAAC
TCTTTTTTCCTTTCTGATTTATTTAGAAGCCGATGAGCTTCTTTCCTCAT
TTTATCTTTTTCGCAAACTTTTGCTTTGTCTGATCTGGTCTGATTCGtct
agattttttcttaaatttttcttttttaattggtCAGATCTTCGAACTTT
TGCTTTGTCTGATTCGtctagattttttcttaaaatttccattctttttg
aagcagattttcgttattttgctttgtctgattcgtctagattttttctt
aaaatgtccattctttttgaagcagattttcgttcttttgctttgtctga
ttcatctagattttttcttaaattttccattctttttgaagcagattttc
gttcttttgctttgtctgattcgtctagattttttcttaaaatgtccATT
CTTTTTGAAGCAGATTTTCGTTCTTTTGCTTTGTCTGATTCATCTAGATT
TTTCCTCCAACTTTCCTTTTTTAGTTTATCAGATTtacgaacattttctt
tctcaaattcgTCTTGGTTATCCCTCATATCTTTCTTTCGTTTTCTATCA
GTGCCTTGAAAAAGCTCTTTTTTGACATCATCGAGATTATACCTGGATTT
TTTCATTGCAGTCTTTTTTGACACAGTTTTGAATTTTCGCTTCCTTTTGA
AAGGAGTAGACCTAATAATATCGGACTCTAGCTTGTTTTTCGATGCCGTG
ACTTTACGTTCTTgattttctaattctttgtggaggacattttttatcat
tttttctgGTTGAATATTTGATGATTGATCAATAGAAAAATCAATGGTAT
TCGAATTGCCATTTGTATTTATCTCTTTAGGTTTATCTTTG Coding sequence (CDS) from alignment at sc0004278:3369..4709 >TCONS_00043482 ID=TCONS_00043482|Name=TCONS_00043482|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0004278:3369..4709 (Clytia hemisphaerica)
ttattttgctttgtctgattcgtctagattttttcttaaaatgtccattc
tttttgaagcagattttcgttcttttgctttgtctgattcatctagattt
tttcttaaattttccattctttttgaagcagattttcgttcttttgcttt
gtctgattcgtctagattttttcttaaaatgtccATTCTTTTTGAAGCAG
ATTTTCGTTCTTTTGCTTTGTCTGATTCATCTAGATTTTTCCTCCAACTT
TCCTTTTTTAGTTTATCAGATTtacgaacattttctttctcaaattcgTC
TTGGTTATCCCTCATATCTTTCTTTCGTTTTCTATCAGTGCCTTGAAAAA
GCTCTTTTTTGACATCATCGAGATTATACCTGGATTTTTTCATTGCAGTC
TTTTTTGACACAGTTTTGAATTTTCGCTTCCTTTTGAAAGGAGTAGACCT
AATAATATCGGACTCTAGCTTGTTTTTCGATGCCGTGACTTTACGTTCTT
gattttctaattctttgtggaggacattttttatcattttttctgGTTGA
ATATTTGATGATTGATCAATAGAAAAATCAATGGTATTCGAATTGCCATT
TGTATTTATCTCTTTAGGTTTATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043482-exon-sc0004278-1491911889:3369..4709 | TCONS_00043482-exon-sc0004278-1491911889:3369..4709 | Clytia hemisphaerica | exon |
| TCONS_00043482-exon-sc0004278-1510915933:3369..4709 | TCONS_00043482-exon-sc0004278-1510915933:3369..4709 | Clytia hemisphaerica | exon |
| TCONS_00043482-exon-sc0004278-1575043694:3369..4709 | TCONS_00043482-exon-sc0004278-1575043694:3369..4709 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004278 | supercontig | sc0004278:3369..4709 . |
Blast
The following BLAST results are available for this feature:
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