TCONS_00043481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043481
Unique NameTCONS_00043481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043481 ID=TCONS_00043481|Name=TCONS_00043481|organism=Clytia hemisphaerica|type=transcript|length=721bp
ACGAACAAGATGATGATTATCGAATTATTCATCCGGATTTGATTGATTTA
GATTATGAAAATGATGCCCAGGATGCAACTAATGAAACCTCATCAGTACC
ATTCACGACATCTGACCAAAATCCTACTATGTCTCTTGATAGATTCTACA
ACATGTGCTCCAACTTAAATGTAAAACAGcgaaactttttcaattttgtc
ttcAAATATGTACTGACTctcaaattttccgaaaaaatgcCATCAATTGA
AAAACCAAATCcatttagactttttttaagTGGCGGTGCAGGAGTTGGAA
AAAGCTTCTTAATAAAGTGTTTGANTTTGTCTTCAAATATGTACTGACTc
tcaaattttccgaaaaaatgcCATCAATTGAAAAACCAAATCcatttaga
ctttttttaagTGGCGGTGCAGGAGTTGGAAAAAGCTTCTTAATAAAGTG
TTTGACTGAACAACTTAAAAAGATTCTGAAAGAACCAGGACAAAATATAG
ATAGAGAACCATCTGTTTTTGTGACAGCATCAACCGGTAAAGCGGTAGCA
AATGTTGACGGTACTACTTTGCATTCAGCTTTCGTGTTACCAATTTATGA
TGAAGGAAGAGGAATAATGCAAAAACGAGGTTTAACTGGAAATGCCTTAC
ATGAATTGAGgttgaaattcaaatatttaaaggttttattgaTTGATGAG
ATTTCAATGATTGGAAAAAGG
Run BLAST on NCBI

protein sequence of TCONS_00043481-protein

>TCONS_00043481-protein ID=TCONS_00043481-protein|Name=TCONS_00043481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MPSIEKPNPFRLFLSGGAGVGKSFLIKCLTEQLKKILKEPGQNIDREPSV
FVTASTGKAVANVDGTTLHSAFVLPIYDEGRGIMQKRGLTGNALHELRLK
FKYLKVLLIDEISMIGKR
Run BLAST on NCBI

transcript from alignment at sc0004278:1..721

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043481 ID=TCONS_00043481|Name=TCONS_00043481|organism=Clytia hemisphaerica|type=transcript|length=721bp|location=Sequence derived from alignment at sc0004278:1..721 (Clytia hemisphaerica)
CCTTTTTCCAATCATTGAAATCTCATCAAtcaataaaacctttaaatatt
tgaatttcaacCTCAATTCATGTAAGGCATTTCCAGTTAAACCTCGTTTT
TGCATTATTCCTCTTCCTTCATCATAAATTGGTAACACGAAAGCTGAATG
CAAAGTAGTACCGTCAACATTTGCTACCGCTTTACCGGTTGATGCTGTCA
CAAAAACAGATGGTTCTCTATCTATATTTTGTCCTGGTTCTTTCAGAATC
TTTTTAAGTTGTTCAGTCAAACACTTTATTAAGAAGCTTTTTCCAACTCC
TGCACCGCCActtaaaaaaagtctaaatgGATTTGGTTTTTCAATTGATG
gcattttttcggaaaatttgagAGTCAGTACATATTTGAAGACAAANTCA
AACACTTTATTAAGAAGCTTTTTCCAACTCCTGCACCGCCActtaaaaaa
agtctaaatgGATTTGGTTTTTCAATTGATGgcattttttcggaaaattt
gagAGTCAGTACATATTTgaagacaaaattgaaaaagtttcgCTGTTTTA
CATTTAAGTTGGAGCACATGTTGTAGAATCTATCAAGAGACATAGTAGGA
TTTTGGTCAGATGTCGTGAATGGTACTGATGAGGTTTCATTAGTTGCATC
CTGGGCATCATTTTCATAATCTAAATCAATCAAATCCGGATGAATAATTC
GATAATCATCATCTTGTTCGT

Coding sequence (CDS) from alignment at sc0004278:1..721

>TCONS_00043481 ID=TCONS_00043481|Name=TCONS_00043481|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0004278:1..721 (Clytia hemisphaerica)
CCTTTTTCCAATCATTGAAATCTCATCAAtcaataaaacctttaaatatt
tgaatttcaacCTCAATTCATGTAAGGCATTTCCAGTTAAACCTCGTTTT
TGCATTATTCCTCTTCCTTCATCATAAATTGGTAACACGAAAGCTGAATG
CAAAGTAGTACCGTCAACATTTGCTACCGCTTTACCGGTTGATGCTGTCA
CAAAAACAGATGGTTCTCTATCTATATTTTGTCCTGGTTCTTTCAGAATC
TTTTTAAGTTGTTCAGTCAAACACTTTATTAAGAAGCTTTTTCCAACTCC
TGCACCGCCActtaaaaaaagtctaaatgGATTTGGTTTTTCAATTGATG
gcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027177XLOC_027177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043481-exon-sc0004278-1491911889:1..721TCONS_00043481-exon-sc0004278-1491911889:1..721Clytia hemisphaericaexon
TCONS_00043481-exon-sc0004278-1510915933:1..721TCONS_00043481-exon-sc0004278-1510915933:1..721Clytia hemisphaericaexon
TCONS_00043481-exon-sc0004278-1575043694:1..721TCONS_00043481-exon-sc0004278-1575043694:1..721Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043481-proteinTCONS_00043481-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004278supercontigsc0004278:1..721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89534	2.61759	1.19685	0.409248	0.205507	0.542627	0.966193	0.822699	0.608923	0.885638	1.70939	0.644788	0.545808	0.886482	0.402771	0.707884	0.738073	1.01753	0.355397	0.344305	0.9648	1.14827	0.415534	0.55751	1.89066	1.29316	0.757739	0.646063	0.235667	0.33227
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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