TCONS_00043479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043479
Unique NameTCONS_00043479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043479 ID=TCONS_00043479|Name=TCONS_00043479|organism=Clytia hemisphaerica|type=transcript|length=409bp
ttaaaattttatatctTTTATTGTAGATAAATAGATTAATTGCTactaaa
atttcaagttttctatatttaaaaaatttccatattgctaaaattttcat
ataaATCTTTAATTGctaataaaatttcaatttttcttttaaaaaatctc
caTAAATGATTTTTAATTCTAATTCTATGTacaaagataaaatccaatct
AATAAGTcctaatatatttttatttcatcgtTTAGCAAAGCTTACTTTAA
AAGGAGCTGCttgtactttatattttattgaaaattttaattatcaaaTC
TTAAACCATCTACCTGCCATTTACAATTTGTAAAACAAATTAAATATAAA
TAAGAATAGCTGCTACTAAAAGCTACATTAAAATATAGCTCAATAAGCAA
AATAGGCTT
Run BLAST on NCBI

transcript from alignment at sc0004277:1..409

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043479 ID=TCONS_00043479|Name=TCONS_00043479|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at sc0004277:1..409 (Clytia hemisphaerica)
AAGCCTATTTTGCTTATTGAGCTATATTTTAATGTAGCTTTTAGTAGCAG
CTATTCTTATTTATATTTAATTTGTTTTACAAATTGTAAATGGCAGGTAG
ATGGTTTAAGAtttgataattaaaattttcaataaaatataaagtacaaG
CAGCTCCTTTTAAAGTAAGCTTTGCTAAacgatgaaataaaaatatatta
ggACTTATTagattggattttatctttgtACATAGAATTAGAATTAAAAA
TCATTTAtggagattttttaaaagaaaaattgaaattttattagCAATTA
AAGATttatatgaaaattttagcaatatggaaattttttaaatatagaaa
acttgaaattttagtAGCAATTAATCTATTTATCTACAATAAAagatata
aaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027175XLOC_027175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043479-exon-sc0004277-1491911889:1..409TCONS_00043479-exon-sc0004277-1491911889:1..409Clytia hemisphaericaexon
TCONS_00043479-exon-sc0004277-1510915933:1..409TCONS_00043479-exon-sc0004277-1510915933:1..409Clytia hemisphaericaexon
TCONS_00043479-exon-sc0004277-1575043694:1..409TCONS_00043479-exon-sc0004277-1575043694:1..409Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004277supercontigsc0004277:1..409 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.180798	0.208304	0.610379	0.396729	0	0.696955	0.281408	0.135748	0	0.163107	0	0	0.371401	0.28896	0.463067	0	0	0	1.36452	1.78409	0.454365	0.974764
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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