TCONS_00043446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043446
Unique NameTCONS_00043446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043446 ID=TCONS_00043446|Name=TCONS_00043446|organism=Clytia hemisphaerica|type=transcript|length=146bp
GTGGACTGTAAGGAAGACAGCCTTTACTCCTAACCTTATGAACgtggact
gtaaggaggacagcctTTACTCCTCAACCTTATGAGCgtggactgtaagg
aggacagcctTTACTCCTAACATGTATGTGCCTGTAGATACTGTNN
Run BLAST on NCBI

transcript from alignment at sc0004229:610..755

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043446 ID=TCONS_00043446|Name=TCONS_00043446|organism=Clytia hemisphaerica|type=transcript|length=146bp|location=Sequence derived from alignment at sc0004229:610..755 (Clytia hemisphaerica)
NNACAGTATCTACAGGCACATACATGTTAGGAGTAAaggctgtcctcctt
acagtccacGCTCATAAGGTTGAGGAGTAAaggctgtcctccttacagtc
cacGTTCATAAGGTTAGGAGTAAAGGCTGTCTTCCTTACAGTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027142XLOC_027142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043446-exon-sc0004229-1491911889:610..755TCONS_00043446-exon-sc0004229-1491911889:610..755Clytia hemisphaericaexon
TCONS_00043446-exon-sc0004229-1510915933:610..755TCONS_00043446-exon-sc0004229-1510915933:610..755Clytia hemisphaericaexon
TCONS_00043446-exon-sc0004229-1575043694:610..755TCONS_00043446-exon-sc0004229-1575043694:610..755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004229supercontigsc0004229:610..755 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top