TCONS_00043414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043414
Unique NameTCONS_00043414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1003

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043414 ID=TCONS_00043414|Name=TCONS_00043414|organism=Clytia hemisphaerica|type=transcript|length=1003bp
GAAAGATTTATTGGTTTAGCGTATGTTGGGATCTCAAGAGTGAGAAAGCT
AAAAGATATGATAATCGAGCCAATGACATTAGAACGATTACAAGATAtta
agaaaaggaaaaattttaaatttcgagaatTAGAAGAACAGAAAATTAAC
GGTTTGGCACTAGAAACTGAGACAAGATTGATTTGATAAGGGTGTACATT
GATGAGAACTAAACGTTTTTAATGACTGGGTGGGTGGTaatacattttca
aaattgtaaatAATGATTTTTCTATTTAAAGCTCGATATCTAATGAATGT
CACAAACACAATTCAATGATGCTTTTACATGATTTTTCCTGAAGGTCATT
TTCAAAGCTTATTCATCAAAACAAGAAATTATTTCAATCATCAACCTTCG
TAACGTTAATTTATAACTCGACCTTCGCTGATTCGTTATCATGTTCTTAC
TTTATTGTTACCTGTTACCTTTTTGCTATTTGTTCAACCATTTCCCTTGA
TGTCCTGGTGTATGTGTCTGTTCAAATCAATTTCTTATATTGCCTACACG
ATTGCTGTATTTGGATCTACAACTTATTACCAATAGATTAGATTCAATGA
AACCTAAACTTTATAAATCTTGCAATGGTGCTGACTTCTGACTTACATGT
TGCTGATACAATGGCGGCTTTTTACCTGGTTGTATGCTTGTGTTCTTGGT
CGTTTAACTGTTAAATATCAAGCCATACAATGGGGTCTTTGGAAATTGAA
TTGTGTTGAGACGGACTATTTTAAAGCAGGAAGCATATTTTTATAAAGAG
TTCTTTACATTTTAAACGATAATATTTTACACGAAAAATACCAATCTTAT
TATAATACATACATCTTATACAGTACTActtggaatttctttttttttac
atctactcttgttatatttttataagGGTCTTTTTAATCAGCTTCAACTT
AGCCAAGTTCTATTTTTGAGTCTCAAATATGCTTATGTAGAACGTGTTGC
AAC
Run BLAST on NCBI

transcript from alignment at sc0004208:1352..2728-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043414 ID=TCONS_00043414|Name=TCONS_00043414|organism=Clytia hemisphaerica|type=transcript|length=1377bp|location=Sequence derived from alignment at sc0004208:1352..2728- (Clytia hemisphaerica)
GAAAGATTTATTGGTTTAGCGTATGTTGGGATCTCAAGAGTGAGAAAGCT
AAAAGATATGATAATCGAGCCAATGACATTAGAACGATTACAAGATATTA
AGAAAAGGAAAAATTTTAAATTTCGAGAATTAGAAGAACAGAAAATTAAC
GGTTTGGCACTAGAAACTGAGACAAGATTGATTTGATAAGGGTGTACATT
GATGAGAACTAAACGTTTTTAATGACTGGGTGGGTGGTAATACATTTTCA
AAATTGTAAATAATGATTTTTCTATTTAAAGCTCGATATCTAATGAATGT
CACAAACACAATTCAATGATGCTTTTACATGATTTTTCCTGAAGGTAAGA
GTGGTAATTTTTTGGTTGTCATGAGTATTTGATTTTTTTATTTAGTTTGT
ACCAGAAAAAAGCACAATCAATTGCGACTCTTTTTGGGCCAATTTTCCAT
GACGTCATTTTTCAGTACAAAACCAATAGAAAATGATTTCAAAAAGACTT
CAAAAATAAATTTAAACTGGTTCATTAGAAAGACCTGGATAGAAAGAGTA
AATAATTAGAAAGAGTAGATAACGAAAATTGGGTTATTTGCCAAATTTCA
GCCACTTTATTTTCAAGGTAAAACCCTAATTCCCACATACTAGTTTCCTT
ATCAACTTGTTCGTATATGACTTTCTGACTTAACAAATAAGTGGCTTGAT
TTTCTTTCCCTTTTTTAGGTCATTTTCAAAGCTTATTCATCAAAACAAGA
AATTATTTCAATCATCAACCTTCGTAACGTTAATTTATAACTCGACCTTC
GCTGATTCGTTATCATGTTCTTACTTTATTGTTACCTGTTACCTTTTTGC
TATTTGTTCAACCATTTCCCTTGATGTCCTGGTGTATGTGTCTGTTCAAA
TCAATTTCTTATATTGCCTACACGATTGCTGTATTTGGATCTACAACTTA
TTACCAATAGATTAGATTCAATGAAACCTAAACTTTATAAATCTTGCAAT
GGTGCTGACTTCTGACTTACATGTTGCTGATACAATGGCGGCTTTTTACC
TGGTTGTATGCTTGTGTTCTTGGTCGTTTAACTGTTAAATATCAAGCCAT
ACAATGGGGTCTTTGGAAATTGAATTGTGTTGAGACGGACTATTTTAAAG
CAGGAAGCATATTTTTATAAAGAGTTCTTTACATTTTAAACGATAATATT
TTACACGAAAAATACCAATCTTATTATAATACATACATCTTATACAGTAC
TACTTGGAATTTCTTTTTTTTTACATCTACTCTTGTTATATTTTTATAAG
GGTCTTTTTAATCAGCTTCAACTTAGCCAAGTTCTATTTTTGAGTCTCAA
ATATGCTTATGTAGAACGTGTTGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027114XLOC_027114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043414-exon-sc0004208-1575043694:2385..2728TCONS_00043414-exon-sc0004208-1575043694:2385..2728Clytia hemisphaericaexon
TCONS_00043414-exon-sc0004208-1575043694:1352..2010TCONS_00043414-exon-sc0004208-1575043694:1352..2010Clytia hemisphaericaexon
TCONS_00043414-exon-sc0004208-1510915933:2385..2728TCONS_00043414-exon-sc0004208-1510915933:2385..2728Clytia hemisphaericaexon
TCONS_00043414-exon-sc0004208-1510915933:1352..2010TCONS_00043414-exon-sc0004208-1510915933:1352..2010Clytia hemisphaericaexon
TCONS_00043414-exon-sc0004208-1491911889:2385..2728TCONS_00043414-exon-sc0004208-1491911889:2385..2728Clytia hemisphaericaexon
TCONS_00043414-exon-sc0004208-1491911889:1352..2010TCONS_00043414-exon-sc0004208-1491911889:1352..2010Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004208supercontigsc0004208:1352..2728 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0446823	0.0460559	0.0505916	0	0.341741	0.540096	0	0.305012	0.20711	0.681429	0.68878	0.582251	0.867068	0	0	0	0	0	0	0.0497035	0.129604	0	0	0.0931544	0.272078	0.728469	0.0612683	0.130774	0.0503625	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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