TCONS_00043405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043405
Unique NameTCONS_00043405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043405 ID=TCONS_00043405|Name=TCONS_00043405|organism=Clytia hemisphaerica|type=transcript|length=252bp
TTCCTAAAGCTTCACATGACTTTCAAACCACAAATATTCTTTTTCTTGCT
CAAAACCAATAAACCAAATAAAGTCATCTTCAATTGCTATTACCATAGGT
CTAGAGACATCTTCCAAAAGCACGCTGTGTTCGGAGCCAGGGTTATTTTT
TCCATACCACAAGCCAGTTTCATAATCTCGAGTAACTTCTTCGAACACTG
AAATTTTTGCATAATGTTGATTACCAATCTGAACGAGATCTACTATTCTG
AC
Run BLAST on NCBI

transcript from alignment at sc0004196:7480..7731

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043405 ID=TCONS_00043405|Name=TCONS_00043405|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0004196:7480..7731 (Clytia hemisphaerica)
GTCAGAATAGTAGATCTCGTTCAGATTGGTAATCAACATTATGCAAAAAT
TTCAGTGTTCGAAGAAGTTACTCGAGATTATGAAACTGGCTTGTGGTATG
GAAAAAATAACCCTGGCTCCGAACACAGCGTGCTTTTGGAAGATGTCTCT
AGACCTATGGTAATAGCAATTGAAGATGACTTTATTTGGTTTATTGGTTT
TGAGCAAGAAAAAGAATATTTGTGGTTTGAAAGTCATGTGAAGCTTTAGG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027105XLOC_027105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043405-exon-sc0004196-1491911889:7480..7731TCONS_00043405-exon-sc0004196-1491911889:7480..7731Clytia hemisphaericaexon
TCONS_00043405-exon-sc0004196-1510915933:7480..7731TCONS_00043405-exon-sc0004196-1510915933:7480..7731Clytia hemisphaericaexon
TCONS_00043405-exon-sc0004196-1575043694:7480..7731TCONS_00043405-exon-sc0004196-1575043694:7480..7731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004196supercontigsc0004196:7480..7731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.625971	0.775367	0	0.494723	1.48211	1.53918	1.68722	0	2.23057	2.28626	5.52754	0	1.43643	2.10192	0	3.09734	0	0	3.05572	4.34819	4.12244	1.68004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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