TCONS_00043404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043404
Unique NameTCONS_00043404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043404 ID=TCONS_00043404|Name=TCONS_00043404|organism=Clytia hemisphaerica|type=transcript|length=337bp
GAGTTAGCCTGGGCTTATCTGGAGTTGATCTTTAAAataTTGCAAAAAGT
CAATCTGATTGAATGAAGAAAACTAAGGTTACAATCAAATGGTGTTGTGG
GTTGATCCACAAGAATTTATTGTTAATAGCTGTACTGAATCTCATTTGCA
ACCTCATGGTGATTAAGAACTGGCATTGGTGGTTGGCGGTTGGTGGTTTC
TTTCAATATCGTCATTATTGTGTTGATGTCCTTTGCCTGTTGCTCCATCA
CCCCACGCATTTGGACCAACTCCAAAGAAAGTTCATCGATCTTCTCACGA
GTGCTTTTTTGATCTTTGGATTGTTGAAGAAATCGAC
Run BLAST on NCBI

transcript from alignment at sc0004196:19..2830-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043404 ID=TCONS_00043404|Name=TCONS_00043404|organism=Clytia hemisphaerica|type=transcript|length=2812bp|location=Sequence derived from alignment at sc0004196:19..2830- (Clytia hemisphaerica)
GAGTTAGCCTGGGCTTATCTGGAGTTGATCTTTAAAGTAAGTTTGTATTG
GTTTTTCTGTTGACTGATGAAAGTTTATTAAAAAACAGTACTAGGAAACC
CAGATCAGATGATTTTTACCTTTGTATGATTTGAGTTTGTTTTAAACCAT
AAAAATTTGGATTCCTTTGAAGTCGACAAAGCTATTTTTCCATACCAAAC
ACAAATAGTTTCTTATCTAATTTAGAATCCTTTTTCCCACTTAATGTGGC
TCTTTGATTATGGATGGGTTAATAATTTATTTTTTGAGATTTGGATTTTT
ACGAGTCGACTTTTCCTTTTGTGTTAGCTTGCATCTTTGAGATAGGTAGC
AATACCTACGGTTAGGCCACCCTGACACCACGTCCAGAAGGGTTTATAGT
ATAGTACAGTTCCTTTAACGGGAAACATGACATGATTAGTAAAACCCCAG
CTGTTTGATTAAAAAAGTATTCTACGTTCTACGTTCTTAAAGATTTTATG
TTTTTGCCTTGTAAAATAAGAAAATTTTTGATCTTGAAAGTCAGAATAGA
GACTACACATGATTTGACTGAGATAAAAACAATGATGTTATAATTCTTTT
TACTCAGTTTAAGGGGAAAAGTTTTAAATTATACAACTCTAAAACTAATG
AATTTTACAAATTTTTGTACAATATGGCTTAATTTTCTCGTTCTTTCAGT
CCAGTGAATCCAGTTTAGTAGAAGGGCAGAAATGAAGAATCTAGGTCGGC
TTTAGTTATTTTAGGTCGATAATGCCAAATGCCAACCTGAATTCACAGGG
CTGTTCCTTTTTTTACTGTTAGGCTGGACTTTAAAAAAATGTTGAATTGC
CTTCACCCTATTCAAAACCTGCCGACCCAAAAAATATTATTATATTGCTA
CCTTATAAAAGAAGAATCTTTTTGTTCCATTTGTTTTAAAAGTCCATCAG
TGCTGGAAATTTTTAAAATCAATAAAATAAAAAAAATATCCAACCGACTG
TCCTCCAAAACTTAGGGTCGGGTGACGGCAAACCAACATTTTTTTAGTCC
AGCTTTATTTTAACATGAACACAAGTTTCGTGAAAAAAAGTAAAAATACT
AAAACTCTTACAATAAATCCTATATTATATTATTATCCTAAATAAATTAG
GTTAAAACAAATGAAGTTGCAATCATAAATCGATCAAGAATTGCTATATA
TATCCTTAAGTGTGATTTACACATGCCAGCTGACACAAAAATCGTTAGAC
CAAAACCTGTGAAGAGTTTAAAAATGCTGACATCAATTTTTTGAAGACGT
TACATTGAAGTTTGAAACTGAAATTCATTCAAGATTGATTCTGAAAATGA
CGTTGATTTTTGTGTCAGCCGACAAAATCGGCTGAGGGTTGATCCATAAG
AATTAATTGTACAAATTTATTGACAATGTCATTAATGATGATAACATGAT
TTTTGANAAATGCTGACATCAATTTTTTGAAGACGTTACATTGAAGTTTG
AAACTGAAATTCATTCAAGATTGATTCTGAAAATGACGTTGATTTTTGTT
TTAATTATTTTGTTTTAGATATTGCAAAAAGTCAATCTGATTGAATGAAG
AAAACTAAGGTTACAATCAAATGGTGTTGTGGGTTGATCCACAAGAATTT
ATTGTTAATAGCTGTACTGAATGTGAGTAAAATTCTGAATGATTTGAGTC
ACCATATAATTTAAGAGCTGACGTTTTGGATCTTGCGAAAAGTCAAACTG
ATTGAATGAAGAAAACATTACCATAGGTTTAAAAAATAATTTTTAATTTT
TTCGACAAAATTTTTACCGACCAACTGACTAACTCGTATTTTTTTTGTAC
AATTTAAAAAAAATCTTTTTCAAATCTGTGGCATTGTGTTTAATTCTCTG
AATCCTTGTCACAATGAATTCAAAACATCGTCTTAAAAGTTCATATTTCG
CTAAGTACCACCGCAAAATGCAGACAACGAAACCAAACACAACTTTTTGA
AGAATTCCTAAGAAATAGTTTAAAAAAATAATGAGGTTACAATGATCAGT
AAATTATTGATAAAAAATTCCTAAGAAATAGCCTCAGAACTTAAGCATAT
GGTGTTTTGCGTTGATCCATGAGAATTTATTTTTAATTTATGTAGCGAAT
AAAATCTGATGAATAATTTAAGAGAATGGATCAATCACTGAGTCACCATA
TGATTTAAGAGCTGGCGCTTTGACTTGGAATATCTGTTATCTGTGTTAAT
AATTTTATATTCTTCCTATGGGCATTCAATTTTATCCCAATTCTAGTCTC
AATGGGTCCCGGGAACTCAAAATCAGGGCGGAGATTGAATTTTTCTCGGA
TAGAACAATAAATATTCCTCATTGTCGCCTCATTTAGTTTCTTCATCCTG
GCGGTGCCTTTTATGTTCCCGTATTTGAGTTCTTGCGGGCTGAATTTACT
TTTCATCATTTCGATGGCGGATTTGGCAATTGCCTCTGTTACTTCAGTTG
TAACCTCCGACTTTGAACTTGTGATTGACCCATTCCCCAAGAGCTCCTCC
ATGTAACCGCCAGGCAAGAAAAGGTTTGGTCTGGTATCCTCAATTGCTTT
TTCAATATTTTCCAGCTCATTTGCAACCTCATGGTGATTAAGAACTGGCA
TTGGTGGTTGGCGGTTGGTGGTTTCTTTCAATATCGTCATTATTGTGTTG
ATGTCCTTTGCCTGTTGCTCCATCACCCCACGCATTTGGACCAACTCCAA
AGAAAGTTCATCGATCTTCTCACGAGTGCTTTTTTGATCTTTGGATTGTT
GAAGAAATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027104XLOC_027104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043404-exon-sc0004196-1575043694:2795..2830TCONS_00043404-exon-sc0004196-1575043694:2795..2830Clytia hemisphaericaexon
TCONS_00043404-exon-sc0004196-1575043694:1159..1262TCONS_00043404-exon-sc0004196-1575043694:1159..1262Clytia hemisphaericaexon
TCONS_00043404-exon-sc0004196-1575043694:19..215TCONS_00043404-exon-sc0004196-1575043694:19..215Clytia hemisphaericaexon
TCONS_00043404-exon-sc0004196-1510915933:2795..2830TCONS_00043404-exon-sc0004196-1510915933:2795..2830Clytia hemisphaericaexon
TCONS_00043404-exon-sc0004196-1510915933:1159..1262TCONS_00043404-exon-sc0004196-1510915933:1159..1262Clytia hemisphaericaexon
TCONS_00043404-exon-sc0004196-1510915933:19..215TCONS_00043404-exon-sc0004196-1510915933:19..215Clytia hemisphaericaexon
TCONS_00043404-exon-sc0004196-1491911889:2795..2830TCONS_00043404-exon-sc0004196-1491911889:2795..2830Clytia hemisphaericaexon
TCONS_00043404-exon-sc0004196-1491911889:1159..1262TCONS_00043404-exon-sc0004196-1491911889:1159..1262Clytia hemisphaericaexon
TCONS_00043404-exon-sc0004196-1491911889:19..215TCONS_00043404-exon-sc0004196-1491911889:19..215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004196supercontigsc0004196:19..2830 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.590724	0.356342	0	0.248034	0.289306	0	0	0	0.191434	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top