TCONS_00043300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043300
Unique NameTCONS_00043300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043300 ID=TCONS_00043300|Name=TCONS_00043300|organism=Clytia hemisphaerica|type=transcript|length=437bp
TAGTCGTACTTTATTAGACTGTCACAACCAGATCTGTGCCTCTGACATTG
AGCCCCCAGTTGTCGCGCGGGAAGAGGTTGTACGGTCCTCTCCTGGCGCG
ATAAgcgaatatttatttttatgccCCAGGCGTTTGTGATCTGACCCGCC
GTTAGAAGACGGGGAGGACTAGAATGTACAGTGGAATTCAGAGTGACAGT
GGAGCAAAGTAGACATTAGTTTTTCTTCAATACATGTTTCACATAAAAAG
TTCCATTAAGGCATCCTCTGGGCTTCCGTGGTTCATCCACAGGCATCCTA
TACAGCGGGCATCCTATACAGCGGGCATCCTATACAGCGGGCATGCGACC
ATGGTTAACGCATCACCAAACGGTGGGAAATTGCGATCGATCGCGGAAGT
AGGCTTTGGCAGACCTGGTTCCTAGGACGGGGTCTGC
Run BLAST on NCBI

transcript from alignment at sc0004105:3535..3971

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043300 ID=TCONS_00043300|Name=TCONS_00043300|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at sc0004105:3535..3971 (Clytia hemisphaerica)
GCAGACCCCGTCCTAGGAACCAGGTCTGCCAAAGCCTACTTCCGCGATCG
ATCGCAATTTCCCACCGTTTGGTGATGCGTTAACCATGGTCGCATGCCCG
CTGTATAGGATGCCCGCTGTATAGGATGCCCGCTGTATAGGATGCCTGTG
GATGAACCACGGAAGCCCAGAGGATGCCTTAATGGAACTTTTTATGTGAA
ACATGTATTGAAGAAAAACTAATGTCTACTTTGCTCCACTGTCACTCTGA
ATTCCACTGTACATTCTAGTCCTCCCCGTCTTCTAACGGCGGGTCAGATC
ACAAACGCCTGGggcataaaaataaatattcgcTTATCGCGCCAGGAGAG
GACCGTACAACCTCTTCCCGCGCGACAACTGGGGGCTCAATGTCAGAGGC
ACAGATCTGGTTGTGACAGTCTAATAAAGTACGACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027008XLOC_027008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043300-exon-sc0004105-1491911889:3535..3971TCONS_00043300-exon-sc0004105-1491911889:3535..3971Clytia hemisphaericaexon
TCONS_00043300-exon-sc0004105-1510915933:3535..3971TCONS_00043300-exon-sc0004105-1510915933:3535..3971Clytia hemisphaericaexon
TCONS_00043300-exon-sc0004105-1575043694:3535..3971TCONS_00043300-exon-sc0004105-1575043694:3535..3971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004105supercontigsc0004105:3535..3971 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311208	0.192794	0.176183	0.565599	0	0	0	0.187288	0.309591	0.162419	0	0.441041	6.80281	4.58781	0.736803	0.200719	0.482199	0.256721	0.886297	1.21372	1.70823	0.686829	0.194105	0.233705	0.668261	1.60891	0.795906	0.367137	0.201049	0.412149
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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