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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043277 ID=TCONS_00043277|Name=TCONS_00043277|organism=Clytia hemisphaerica|type=transcript|length=952bp
ATCATTAGcaaaaattgctcaaaacttaatacaataaaaatgaacttaGT
CATTGTCTTAGCAGGGATCGTTGCAGTATGCAGTGGATTATCAGCACCTG
ATAACCCATGTCCAAACACTTTATGTAAAGGAAAATCTGAGGGAAACTTT
GCTTATGTCAACCCAACCAACAACAAACTTGTGAAGAACCTCTTCGTCCA
ATGTGTCGAAGGAAATGCATATTGTCAAGCTTGTTGGCCACTCAGTTTGG
AATTCAGTCCACGATGCAACCAATGTTTGTATCGTTCAAATGATGAATGT
GTCAAAACTGTTCCATTCTAACCAGCCACCACTTTCCAATGCCCAGACAA
ATGTCCCAACCGTGGACCAAAATTCACCGGAAAAATTGCTGACCCAGCTG
AAAAACGACAATACGTGCTATGCTGGGAAGGAGTAACTGTTGGATGTGTT
GCTTGTCCAGGAAAATTGGAATTCAACGAAAGCGAGAACGCTTGCTTATT
CGAAGGAAAATACATTACTGAACCAAACGAAGAACTAATAAAATACTCTT
GTTGAATACTTTTACATTCTAGGCTTCTTTGTAAAACCGAAGATTATATA
CTTCTGTCTTCGCTAGAGTATTATGCATCCTTTTTTCTAATCTTCCCAAT
CTCCAATTTTTGCCTTTCCAGTTTGTAGATGCATTTCCTCTAAACCATCC
AtactttatttttcaatattgtCACTCTCCCTATTCACGCTGAAAATATC
TTTAATTTAATCTTGGCTTTATTCACTGACGCTTTCAAAGCTACCTCCAC
CTATATTTCTTATTGCCACCAGAGGAAGTCTAAAgctttttcagccttaa
atgtcaatattaatcaaaatggaaacatgtacttctcagtaatttctgaa
atctgaggttcagattcttcttaatttgttcttaggttttggccaaattt
ca Run BLAST on NCBI protein sequence of TCONS_00043277-protein >TCONS_00043277-protein ID=TCONS_00043277-protein|Name=TCONS_00043277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
IISKNCSKLNTIKMNLVIVLAGIVAVCSGLSAPDNPCPNTLCKGKSEGNF
AYVNPTNNKLVKNLFVQCVEGNAYCQACWPLSLEFSPRCNQCLYRSNDEC
VKTVPF Run BLAST on NCBI transcript from alignment at sc0004086:7192..8405+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043277 ID=TCONS_00043277|Name=TCONS_00043277|organism=Clytia hemisphaerica|type=transcript|length=1214bp|location=Sequence derived from alignment at sc0004086:7192..8405+ (Clytia hemisphaerica)
ATCATTAGcaaaaattgctcaaaacttaatacaataaaaatgaacttaGT
CATTGTCTTAGCAGGGATCGTTGCAGGTATGTCTTTTAGATTTTAGTCTA
AATAAGATTAGGTTTTTTCTTGTCAGGGTTACCACCGAACTGTCTTTCAT
AGCTTTTTAACCCACATTTAGGGTGATGAAGTTTACTCTTCCTTAACTTA
ACCATTTTATGTTCCTAAAAAAGTCTACTCTAACTCGTGCATAAGAAAAT
TGGACAAAATTAATATACCTGGTCCCTAAAGTTGTTGAAATGACTAAAAC
CGAAAATAAGTGTagcaaaagtgttttttttattccagTATGCAGTGGAT
TATCAGCACCTGATAACCCATGTCCAAACACTTTATGTAAAGGAAAATCT
GAGGGAAACTTTGCTTATGTCAACCCAACCAACAACAAACTTGTGAAGAA
CCTCTTCGTCCAATGTGTCGAAGGAAATGCATATTGTCAAGCTTGTTGGC
CACTCAGTTTGGAATTCAGTCCACGATGCAACCAATGTTTGTATCGTTCA
AATGATGAATGTGTCAAAACTGTTCCATTCTAACCAGCCACCACTTTCCA
ATGCCCAGACAAATGTCCCAACCGTGGACCAAAATTCACCGGAAAAATTG
CTGACCCAGCTGAAAAACGACAATACGTGCTATGCTGGGAAGGAGTAACT
GTTGGATGTGTTGCTTGTCCAGGAAAATTGGAATTCAACGAAAGCGAGAA
CGCTTGCTTATTCGAAGGAAAATACATTACTGAACCAAACGAAGAACTAA
TAAAATACTCTTGTTGAATACTTTTACATTCTAGGCTTCTTTGTAAAACC
GAAGATTATATACTTCTGTCTTCGCTAGAGTATTATGCATCCTTTTTTCT
AATCTTCCCAATCTCCAATTTTTGCCTTTCCAGTTTGTAGATGCATTTCC
TCTAAACCATCCAtactttatttttcaatattgtCACTCTCCCTATTCAC
GCTGAAAATATCTTTAATTTAATCTTGGCTTTATTCACTGACGCTTTCAA
AGCTACCTCCACCTATATTTCTTATTGCCACCAGAGGAAGTCTAAAgctt
tttcagccttaaatgtcaatattaatcaaaatggaaacatgtacttctca
gtaatttctgaaatctgaggttcagattcttcttaatttgttcttaggtt
ttggccaaatttca Coding sequence (CDS) from alignment at sc0004086:7192..8405+ >TCONS_00043277 ID=TCONS_00043277|Name=TCONS_00043277|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0004086:7192..8405+ (Clytia hemisphaerica)
ATCATTAGcaaaaattgctcaaaacttaatacaataaaaatgaacttaGT
CATTGTCTTAGCAGGGATCGTTGCAGTATGCAGTGGATTATCAGCACCTG
ATAACCCATGTCCAAACACTTTATGTAAAGGAAAATCTGAGGGAAACTTT
GCTTATGTCAACCCAACCAACAACAAACTTGTGAAGAACCTCTTCGTCCA
ATGTGTCGAAGGAAATGCATATTGTCAAGCTTGTTGGCCACTCAGTTTGG
AATTCAGTCCACGATGCAACCAATGTTTGTATCGTTCAAATGATGAATGT
GTCAAAACTGTTCCATTCTAAATCATTAGcaaaaattgctcaaaacttaa
tacaataaaaatgaacttaGTCATTGTCTTAGCAGGGATCGTTGCAGTAT
GCAGTGGATTATCAGCACCTGATAACCCATGTCCAAACACTTTATGTAAA
GGAAAATCTGAGGGAAACTTTGCTTATGTCAACCCAACCAACAACAAACT
TGTGAAGAACCTCTTCGTCCAATGTGTCGAAGGAAATGCATATTGTCAAG
CTTGTTGGCCACTCAGTTTGGAATTCAGTCCACGATGCAACCAATGTTTG
TATCGTTCAAATGATGAATGTGTCAAAACTGTTCCATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043277-exon-sc0004086-1491911889:7192..7267 | TCONS_00043277-exon-sc0004086-1491911889:7192..7267 | Clytia hemisphaerica | exon |
| TCONS_00043277-exon-sc0004086-1510915933:7192..7267 | TCONS_00043277-exon-sc0004086-1510915933:7192..7267 | Clytia hemisphaerica | exon |
| TCONS_00043277-exon-sc0004086-1575043694:7192..7267 | TCONS_00043277-exon-sc0004086-1575043694:7192..7267 | Clytia hemisphaerica | exon |
| TCONS_00043277-exon-sc0004086-1491911889:7530..8405 | TCONS_00043277-exon-sc0004086-1491911889:7530..8405 | Clytia hemisphaerica | exon |
| TCONS_00043277-exon-sc0004086-1510915933:7530..8405 | TCONS_00043277-exon-sc0004086-1510915933:7530..8405 | Clytia hemisphaerica | exon |
| TCONS_00043277-exon-sc0004086-1575043694:7530..8405 | TCONS_00043277-exon-sc0004086-1575043694:7530..8405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004086 | supercontig | sc0004086:7192..8405 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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